Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_O22
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.67 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.6  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   4.7  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   8.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   8.2  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = -2

Query: 784 ALKIFHSKMLYIKKLYKNFPDSFLCIQYSKSMH 686
           ++ IF+  +L+++ L ++ P++ + I YSK+MH
Sbjct: 262 SISIFNLILLHLRALIRSSPENAIKIGYSKTMH 294


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 676 HSQTKVQILSTMHYSIHHQF 617
           H  TKVQ+++   YS HH+F
Sbjct: 569 HLYTKVQLITPEFYSEHHEF 588


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +1

Query: 568 WINLITLTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMNAYFCCIVCIRMNLENSYKAS 747
           W+ ++ + +FS+   L +  +  +  W +  P+  +    A + C       L+ SY   
Sbjct: 14  WVTILAVILFSIAFILHVACLAFTRKWLVIVPIIGTIGELAGWAC------RLDASYNPD 67

Query: 748 LYRASWSGIFLGLTFVFNFYFVENY 822
            Y A + G  + L     FY  + Y
Sbjct: 68  DYNA-FLGQIIALIIAPVFYSAQAY 91


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 643  WWTIFAPLFVSDAMNAYFCCI 705
            W+ I +P F+SD + A  C I
Sbjct: 1208 WFEIDSPKFISDTLEAMICAI 1228


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 646 WTIFAPLFVSDAMNAYFCCIVCIRMNLENSYKASLYRASWSGIFLGLTFVFNFYFVENY- 822
           W  F   FV+  +    C I          +   +  A+W  IFL +  V N + V  Y 
Sbjct: 160 WNYFLNYFVTCPLELTTCAITF-------KFWTEINSAAWISIFLAVVIVINLFGVRAYG 212

Query: 823 KVIRLXNTVK 852
           +V  + +T+K
Sbjct: 213 EVEFILSTIK 222


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 433 DIHHPST*EYLGQQCSDLIKTSERVIMFFT-LNEIVQWI-GLTVFEIWINLITLTIFSVL 606
           D++   T E +   C ++ K  + +      LN+ +  + G+ +F + +  ITL IF  L
Sbjct: 558 DLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLDGICMFIVAV--ITLFIFLYL 615

Query: 607 LALKIDGVLNSAWWTI 654
           +A    GVL SA  T+
Sbjct: 616 IARNFSGVLTSAGTTL 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,971
Number of Sequences: 5004
Number of extensions: 70315
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)