Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_O20
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 1.2
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 4.7
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 8.1
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1589 SPSYSP-TSPSYSPTSPSYSATSPSYSPTSPSYSP 1622
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1603 SPSYSA-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = +1
Query: 622 YQAFPPGSSLVRSPVPTLPLTGYLS-AFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCT 798
Y PG S + +P+ P S ++ P+ S + + +PS++ T
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP-T 1616
Query: 799 NPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+P +SPT+ Y S P P+Y P
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1617 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1624 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1631 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1638 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1645 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1652 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1659 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1666 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1673 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1680 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1687 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1694 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1701 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1708 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 775 APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
+PS++ T+P +SPT+ Y S P P+Y P
Sbjct: 1715 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -1
Query: 852 DSRR*YXIXRSGRAERGVRAHSPAWSERXTPELRYXTA*AMRKRHASRREKGGQV---SG 682
D+ Y R ERG W+++ P + RRE+GG+V SG
Sbjct: 59 DAEDAYYEVHGRRLERGGGVLRVEWAKQPPPS-------GPGSKRGGRRERGGRVHGDSG 111
Query: 681 KRQGRNRRAHEGASR 637
+ + R+ HE SR
Sbjct: 112 RLRSRSPSPHEARSR 126
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 562 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 690
++HKNR+S+ P GL Y+A PPG + L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,595
Number of Sequences: 5004
Number of extensions: 58593
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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