Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_O20
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    30   2.1  
05_05_0129 - 22594527-22594922                                         29   3.7  
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    29   3.7  
06_03_0218 + 18219956-18220555                                         28   8.6  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.6  
03_04_0061 - 16949038-16950006                                         28   8.6  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 527 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 685
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 846 RR*YXIXRSGRAERGVRAHSPAWSERXTPELRYXTA*AMRKRHASRREKGGQVSGKRQGR 667
           RR Y     GR+     +   ++S   +P+ +   + + RKR++ R+    + SGKR  R
Sbjct: 245 RRCYSPSARGRSYSRSVSPQRSYSHSCSPDSQRSGSYSPRKRYSERKPSRSRSSGKRHSR 304

Query: 666 NRRAHEGAS 640
              +H  +S
Sbjct: 305 ESYSHSRSS 313


>05_05_0129 - 22594527-22594922
          Length = 131

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -1

Query: 819 GRAERGVRAHSPAWSERXTPELRYXTA*AMRKRHA------SRREKGGQVSGKRQGRNR 661
           G AE    + SP+W  R TP LR  ++  MR+R A       R ++G    G+R+GR R
Sbjct: 20  GAAETASASVSPSWPRR-TPMLR--SSILMRQRVAVCIWRRRRLQRGSSEEGRRRGRER 75


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 775  APSWAVCTNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
            +PS++  T+P +SPT+  Y   SS   P  P Y P
Sbjct: 1756 SPSYSP-TSPSYSPTSPSYSPTSSAYSPTSPAYSP 1789



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +1

Query: 658  SPVPTLPLTG--YLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVC--TNPPFSPTAA 825
            SP+ + PLT   Y+   LP    +  +S+   +       ++P+      T+P +SPT+ 
Sbjct: 1623 SPL-SCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSP 1681

Query: 826  XYXVLSS*VXPXDPTYPP 879
             Y   SS   P  P+Y P
Sbjct: 1682 VYNPTSSAYSPTSPSYNP 1699


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 714 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 619
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 735 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 634
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 609 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 725
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,644,533
Number of Sequences: 37544
Number of extensions: 479802
Number of successful extensions: 1514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1507
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)