Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_O20
(879 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001634-1|AAN71389.1| 451|Drosophila melanogaster RE38701p pro... 30 4.8
AY058715-1|AAL13944.1| 451|Drosophila melanogaster LD45348p pro... 30 4.8
AE014297-327|AAF51973.2| 648|Drosophila melanogaster CG2179-PB,... 30 4.8
AE014297-326|AAF51972.2| 783|Drosophila melanogaster CG2179-PA,... 30 4.8
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 29 6.4
M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase... 29 6.4
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 29 6.4
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 29 6.4
AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-P... 29 6.4
U31961-5|AAA84404.1| 424|Drosophila melanogaster protein ( Dros... 29 8.5
AE014297-2268|AAF55361.3| 417|Drosophila melanogaster CG10349-P... 29 8.5
>BT001634-1|AAN71389.1| 451|Drosophila melanogaster RE38701p
protein.
Length = 451
Score = 29.9 bits (64), Expect = 4.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = -1
Query: 873 IXRVXRVDSRR*YXIXRSGRAERGVRAHSPAWSERX-TPELRYXT--A*AMRKRHASRRE 703
+ R R SR +S + R R+HS + R TP R A R R +S
Sbjct: 277 VCRSRRSKSRSRSHYRKSSYSSRSRRSHSRSSRSRSKTPSQRKNRKLASTRRSRSSSYSR 336
Query: 702 KGGQVSGKRQGRNRRAHEGASRGKR 628
+ +RQ +RR H G R R
Sbjct: 337 SRSRSHSRRQSSSRRDHRGRHRSSR 361
>AY058715-1|AAL13944.1| 451|Drosophila melanogaster LD45348p
protein.
Length = 451
Score = 29.9 bits (64), Expect = 4.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = -1
Query: 873 IXRVXRVDSRR*YXIXRSGRAERGVRAHSPAWSERX-TPELRYXT--A*AMRKRHASRRE 703
+ R R SR +S + R R+HS + R TP R A R R +S
Sbjct: 277 VCRSRRSKSRSRSHYRKSSYSSRSRRSHSRSSRSRSKTPSQRKNRKLASTRRSRSSSYSR 336
Query: 702 KGGQVSGKRQGRNRRAHEGASRGKR 628
+ +RQ +RR H G R R
Sbjct: 337 SRSRSHSRRQSSSRRDHRGRHRSSR 361
>AE014297-327|AAF51973.2| 648|Drosophila melanogaster CG2179-PB,
isoform B protein.
Length = 648
Score = 29.9 bits (64), Expect = 4.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = -1
Query: 873 IXRVXRVDSRR*YXIXRSGRAERGVRAHSPAWSERX-TPELRYXT--A*AMRKRHASRRE 703
+ R R SR +S + R R+HS + R TP R A R R +S
Sbjct: 474 VCRSRRSKSRSRSHYRKSSYSSRSRRSHSRSSRSRSKTPSQRKNRKLASTRRSRSSSYSR 533
Query: 702 KGGQVSGKRQGRNRRAHEGASRGKR 628
+ +RQ +RR H G R R
Sbjct: 534 SRSRSHSRRQSSSRRDHRGRHRSSR 558
>AE014297-326|AAF51972.2| 783|Drosophila melanogaster CG2179-PA,
isoform A protein.
Length = 783
Score = 29.9 bits (64), Expect = 4.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = -1
Query: 873 IXRVXRVDSRR*YXIXRSGRAERGVRAHSPAWSERX-TPELRYXT--A*AMRKRHASRRE 703
+ R R SR +S + R R+HS + R TP R A R R +S
Sbjct: 609 VCRSRRSKSRSRSHYRKSSYSSRSRRSHSRSSRSRSKTPSQRKNRKLASTRRSRSSSYSR 668
Query: 702 KGGQVSGKRQGRNRRAHEGASRGKR 628
+ +RQ +RR H G R R
Sbjct: 669 SRSRSHSRRQSSSRRDHRGRHRSSR 693
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 29.5 bits (63), Expect = 6.4
Identities = 26/83 (31%), Positives = 33/83 (39%)
Frame = +1
Query: 631 FPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPF 810
FP S+ S PT P Y +A P G+ S S +P +A T P F
Sbjct: 1571 FPASPSVSPSYSPTSP--NY-TASSPGGASPNYSPSSPNYSPTSPLYASPRYA-STTPNF 1626
Query: 811 SPTAAXYXVLSS*VXPXDPTYPP 879
+P + Y SS P P Y P
Sbjct: 1627 NPQSTGYSPSSSGYSPTSPVYSP 1649
>M19537-1|AAA28827.1| 408|Drosophila melanogaster RNA polymerase II
largest subunit protein.
Length = 408
Score = 29.5 bits (63), Expect = 6.4
Identities = 26/83 (31%), Positives = 33/83 (39%)
Frame = +1
Query: 631 FPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPF 810
FP S+ S PT P Y +A P G+ S S +P +A T P F
Sbjct: 90 FPASPSVSPSYSPTSP--NY-TASSPGGASPNYSPSSPNYSPTSPLYASPRYA-STTPNF 145
Query: 811 SPTAAXYXVLSS*VXPXDPTYPP 879
+P + Y SS P P Y P
Sbjct: 146 NPQSTGYSPSSSGYSPTSPVYSP 168
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 29.5 bits (63), Expect = 6.4
Identities = 26/83 (31%), Positives = 33/83 (39%)
Frame = +1
Query: 631 FPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPF 810
FP S+ S PT P Y +A P G+ S S +P +A T P F
Sbjct: 1111 FPASPSVSPSYSPTSP--NY-TASSPGGASPNYSPSSPNYSPTSPLYASPRYA-STTPNF 1166
Query: 811 SPTAAXYXVLSS*VXPXDPTYPP 879
+P + Y SS P P Y P
Sbjct: 1167 NPQSTGYSPSSSGYSPTSPVYSP 1189
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 29.5 bits (63), Expect = 6.4
Identities = 26/83 (31%), Positives = 33/83 (39%)
Frame = +1
Query: 631 FPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPF 810
FP S+ S PT P Y +A P G+ S S +P +A T P F
Sbjct: 1569 FPASPSVSPSYSPTSP--NY-TASSPGGASPNYSPSSPNYSPTSPLYASPRYA-STTPNF 1624
Query: 811 SPTAAXYXVLSS*VXPXDPTYPP 879
+P + Y SS P P Y P
Sbjct: 1625 NPQSTGYSPSSSGYSPTSPVYSP 1647
>AE014297-4641|AAN14249.1| 659|Drosophila melanogaster CG31019-PA
protein.
Length = 659
Score = 29.5 bits (63), Expect = 6.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 693 QVSGKRQGRNRRAHEGASRGK 631
+V KR+GRNR AH SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511
>U31961-5|AAA84404.1| 424|Drosophila melanogaster protein (
Drosophila melanogasterbithorax complex (BX-C), complete
sequence. ).
Length = 424
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 310 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 405
ES +VC G LP+P L C + GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371
>AE014297-2268|AAF55361.3| 417|Drosophila melanogaster CG10349-PA
protein.
Length = 417
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 310 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 405
ES +VC G LP+P L C + GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,231,342
Number of Sequences: 53049
Number of extensions: 749396
Number of successful extensions: 2070
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2054
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4270708416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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