Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_O20
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 32 0.47
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 32 0.62
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 2.5
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 2.5
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 7.7
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 7.7
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 7.7
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 32.3 bits (70), Expect = 0.47
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +1
Query: 643 SSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPFSPTA 822
++LV P+T AFL +GS A++ S++ G P P +PT
Sbjct: 618 TTLVAGSTVVTPMTEATGAFLSAGSTAMTPSTQ-GTGATGVTMSTPGTMATGTTPMTPTV 676
Query: 823 AXYXVLSS*VXPXDPT 870
+ + + V P PT
Sbjct: 677 SVWGTNTPAVTPASPT 692
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 614 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 736
Y+ R+F +E ALL + +P+TC + E W FL A
Sbjct: 71 YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +1
Query: 667 PTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPFSPTAAXYXVLSS 846
PT P S SG S + S +PS++ T+P +SPT+ Y S
Sbjct: 1698 PTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSP-TSPQYSPTSPQYSPSSP 1756
Query: 847 *VXPXDPTYPP 879
P PTY P
Sbjct: 1757 TYTPSSPTYNP 1767
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 796 TNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
T+P +SPT+ Y S P PTY P
Sbjct: 1678 TSPTYSPTSPTYSPTSPTYSPTSPTYSP 1705
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 796 TNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
T+P +SPT+ Y S P PTY P
Sbjct: 1781 TSPTYSPTSPSYTPSSPQYSPTSPTYTP 1808
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/71 (30%), Positives = 29/71 (40%)
Frame = +1
Query: 667 PTLPLTGYLSAFLPSGSVALSHSSRXXVSQFGCXSFAPSWAVCTNPPFSPTAAXYXVLSS 846
PT P S SG S + S +PS++ T+P +SPT+ Y S
Sbjct: 1705 PTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSP-TSPQYSPTSPQYSPSSP 1763
Query: 847 *VXPXDPTYPP 879
P PTY P
Sbjct: 1764 TYTPSSPTYNP 1774
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 796 TNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
T+P +SPT+ Y S P PTY P
Sbjct: 1685 TSPTYSPTSPTYSPTSPTYSPTSPTYSP 1712
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 796 TNPPFSPTAAXYXVLSS*VXPXDPTYPP 879
T+P +SPT+ Y S P PTY P
Sbjct: 1788 TSPTYSPTSPSYTPSSPQYSPTSPTYTP 1815
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 483 SHVLSCVIXLILWITVLPPLSELIPLAA 400
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 483 SHVLSCVIXLILWITVLPPLSELIPLAA 400
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 483 SHVLSCVIXLILWITVLPPLSELIPLAA 400
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,012
Number of Sequences: 27780
Number of extensions: 356750
Number of successful extensions: 1015
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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