Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_O12
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   2.1  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   8.5  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = -3

Query: 409 PARSTMSSILYTSRH*VGTHTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 230
           P+ +  SS+L  S   V +  L  ++  E ++S   SL S+DP+  STF SL    T  +
Sbjct: 130 PSSTESSSLLDPSS--VSSAILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSSS 185

Query: 229 APEVPS 212
            P V S
Sbjct: 186 QPSVSS 191


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 686 TAAVTSVLTDEQRYSLEHVV 627
           T+ ++ V++DE+ YSLE ++
Sbjct: 122 TSGISFVISDEENYSLEEII 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,401
Number of Sequences: 5004
Number of extensions: 59680
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)