Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_O08
(941 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.90
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.90
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.90
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.6
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.8
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 8.4
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 8.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGWRXXXPFSPXAGGGAXXXPQGRXAGPF 636
PPPP P G P + GG PP G P P GG P G F
Sbjct: 742 PPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGW---RXXXPFSPXAGGGAXXXPQGRXAGPFPX 642
PPPP P G P + GG PP G P P GG P G F
Sbjct: 726 PPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 643 GSAP 654
G P
Sbjct: 783 GPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGWRXXXPFSPXAGGGAXXXPQGRXAGPF 636
PPPP P G P + GG PP G P P GG P G F
Sbjct: 742 PPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGW---RXXXPFSPXAGGGAXXXPQGRXAGPFPX 642
PPPP P G P + GG PP G P P GG P G F
Sbjct: 726 PPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 782
Query: 643 GSAP 654
G P
Sbjct: 783 GPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.90
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGWRXXXPFSPXAGGGAXXXPQGRXAGPF 636
PPPP P G P + GG PP G P P GG P G F
Sbjct: 325 PPPPPPPG---GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPPXXGW---RXXXPFSPXAGGGAXXXPQGRXAGPFPX 642
PPPP P G P + GG PP G P P GG P G F
Sbjct: 309 PPPPPPPG---GLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKG 365
Query: 643 GSAP 654
G P
Sbjct: 366 GPPP 369
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/71 (35%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Frame = +1
Query: 442 GAPFHFXSX*PPPPXRPAXVXGXPSLRG--GNTXXPPXXGWRXXXPFSPXAGGGAXXXPQ 615
GAP H PP P PA G P G GN P G R P G PQ
Sbjct: 158 GAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQSGQRSRGLPGPSGRPG----PQ 213
Query: 616 GRXAGPFPXGS 648
G P GS
Sbjct: 214 GPPGAPGQPGS 224
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Frame = -1
Query: 653 GAEPXGKGPAXRPWGXKXAPPPAXGEKGXXXRQPXXGGXXVF--PPRXEGXPXTXAGRXG 480
GA P + A P PPP G P G F PP G P G G
Sbjct: 349 GAPPPQQFHAPSPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQGPGG-PG 407
Query: 479 GGGXXEXKWKGAP 441
G G GAP
Sbjct: 408 GYGPPPPGGPGAP 420
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/71 (33%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = +1
Query: 442 GAPFHFXSX*PPPPXRPAXVXGXPSLRG--GNTXXPPXXGWRXXXPFSPXAGGGAXXXPQ 615
GAP PP P PA G P G GN P G R P G PQ
Sbjct: 160 GAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGKSGQRGRGLPGPSGAPG----PQ 215
Query: 616 GRXAGPFPXGS 648
G P GS
Sbjct: 216 GPPGAPGQPGS 226
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPP 546
PPPP P+ + P L+GG PP
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPP 794
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 472 PPPPXRPAXVXGXPSLRGGNTXXPP 546
PPPP P+ + P L+GG PP
Sbjct: 770 PPPPPPPSAIPLPPRLQGGIPPPPP 794
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,013
Number of Sequences: 27780
Number of extensions: 170874
Number of successful extensions: 369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -