Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N21
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   6.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.5  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   8.6  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   8.6  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -2

Query: 409 TPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFR 230
           TPS +    +  P  +S     L  ++  E ++S   SL S+DP+  STF SL    T  
Sbjct: 129 TPSSTESSSLLDPSSVSSA--ILPSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSS 184

Query: 229 AAPEVPS 209
           + P V S
Sbjct: 185 SQPSVSS 191


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
 Frame = +3

Query: 405 GVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGLDYMFKQKVGASLSAAHS 584
           G A +V +   + H   A   +  +SP   PNA   N    G   + +  +   LS+  S
Sbjct: 409 GEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSS--S 466

Query: 585 DVINRNDYSAGGKLNLFQS-----PSSSLDFNAGXSR--SSIRLFTDLRGSP 719
            + +   +S+GG  + F S     PS  L  +    R  +  + F+D+R  P
Sbjct: 467 GLFDNGLFSSGGLSSNFSSLRRPAPSMHLADSIRSLRGLNDSKAFSDIRSMP 518


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 406 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRS 296
           PS +  PG  VP  +S  P   S  S + A+LSL  S
Sbjct: 310 PSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 627 NLFQSPSSSLDFNAGXSRSSIRLFTDLRGSP 719
           NLF + S+S   N G S S++    DL GSP
Sbjct: 228 NLFGNSSTSPQDNFGTSNSALSRNLDLFGSP 258


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 528 GLDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFQSPSSSLDFNAGXSRSSIRLFTDL 707
           GL + F+  +   + +A ++    +++      N+ Q P   L  N+G +R S +LF DL
Sbjct: 162 GLAFRFQHALVIGVQSATNNACVEHEFEITIVPNVQQQPELPLGKNSG-NRQSSKLFADL 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,298
Number of Sequences: 5004
Number of extensions: 49841
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)