Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N19
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    55   2e-08
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    32   0.13 
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    29   0.70 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    26   8.7  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   8.7  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   8.7  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 28/69 (40%), Positives = 39/69 (56%)
 Frame = +2

Query: 344 KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVXDCKLEXKDMHGETPYEIMFGPDICGPGT 523
           +P +   K LVVQ+ V  E+ ++CGG YLK+   +    +M     Y IMFGPD CG   
Sbjct: 109 EPINEPEKDLVVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGV-N 166

Query: 524 NXVHVIFXY 550
           + VH IF +
Sbjct: 167 DRVHFIFKH 175


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +2

Query: 368 PLVVQFTVKHEQDIDCGGGYLKVXDCKLEXKDMHGETPYEIMFGPDICGPGTNXVHVIFX 547
           P+V+ F VK  +   CG  Y+ +   +   K++  E P  I FG   CG        I  
Sbjct: 103 PIVLSFQVKPTKPWTCGHAYVSLVH-QSNPKNVSKEPPSVIRFGVKKCGMFDYISLSIIS 161

Query: 548 YNGK 559
           Y+GK
Sbjct: 162 YDGK 165


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 727 PRDPCKPTKPXXLXXDQAPTIPHPPXNTEHPAXXR 831
           P+ P KP+KP        P  P PP   EH +  R
Sbjct: 156 PKKPSKPSKPRKKVPVSHPLPPTPPSREEHVSVPR 190


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 214 CTPNCFPTNHQETSPQRIHHNLSKIMPASXQRPSTT 107
           C P  FP N+QE      H+    I  AS Q  + T
Sbjct: 791 CKPESFPANYQEVLDYYTHNGFRVIACASKQLENCT 826


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -2

Query: 251 NLNFPNSFPGCXLYTQLLSHESSGNFSSKNTSQFIEDNASKLXT 120
           N N    F      + + S  +SGNFS   T Q   DN S   T
Sbjct: 575 NSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTTDNTSSFST 618


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +1

Query: 727 PRDPCKPTKPXXLXXDQAPTIPHPPXN---TEHPAXXRPP 837
           P  P  P +P      +AP++P PP      E P+  +PP
Sbjct: 644 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPP 683


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 110 NSFHFRFTVPPSSXKARPRILTGR-GY 33
           +S +FR  VP +  KA PR+  G+ GY
Sbjct: 330 SSLNFRIPVPTNVVKANPRVNRGKAGY 356


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 169 EEKFPDDSWESNWVYS 216
           EEKFPD +W  +W  S
Sbjct: 251 EEKFPDIAWRVSWSLS 266


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 104 FHFRFTVPPSSXKARPRI 51
           FH+R + PP   K+ PR+
Sbjct: 98  FHYRLSPPPGEFKSSPRV 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,895,243
Number of Sequences: 5004
Number of extensions: 50210
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)