Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N18
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.71 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    25   0.71 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.71 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.71 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   0.71 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    25   0.94 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.94 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.94 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.94 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.94 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 194 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 210 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 250


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 168 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           +E +K+    N +RN     +H SSR + +   +R+ +++Y
Sbjct: 205 NESKKYATSSNSLRNRTHDFQHTSSRYSRERRCSRDRNREY 245


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 206 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 245


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 ELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDY 290
           E +K+    N +RN     +H SSR + + + +R+ +++Y
Sbjct: 195 ESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREY 234


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 193 SKPCFLSS-CTRPHLVNVLASEPTQRTTKAKIINFCXSIVSFEL 65
           ++P +L+S C    L + L SE  Q  +  K+I+    +V  ++
Sbjct: 157 NRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDM 200


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 504 STVNFR*TFDSISSKQNCVLSASFLT 581
           ST+++  T+DSI ++ + +    F+T
Sbjct: 161 STIDY--TYDSIEARDSAIFDGDFIT 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,692
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)