Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.65 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    29   0.86 
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    29   1.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    28   2.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   2.0  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   3.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   8.0  

>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 783 SFWYNKTIFL*CCMYFFSSFLGFRKFCGFT 694
           +F ++  +FL CC Y +   +  R F GFT
Sbjct: 174 TFSWSVIVFLHCCAYNYGGLIALRFFLGFT 203


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 25/105 (23%), Positives = 44/105 (41%)
 Frame = +2

Query: 194 ITQNLRRAAEKLYEDPIEEVERRLLIASGLPNRTGDQIRALIDGYERPDRPDK*RMCDSS 373
           + +  R+A +K   + +    +R  +  G   +     R  + G  R  R  +    +  
Sbjct: 509 VYEKQRKAEQKAKSNGVMNGNQRQFL--GFTFKYRPNARKPLVGRHREKRQLRKEKPEKK 566

Query: 374 NNSTKDKNVISKYFTRAADESLEDFKETKRIITSPKIIKPARKQR 508
           NNSTK K++I+    +    ++ED  E KR  T     K +R  R
Sbjct: 567 NNSTKQKDLITVSHNKGT-TAIEDLDEDKRSKTKGHKTKSSRVHR 610


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 167 CGFYFHNASITQNLRRAAEKLYEDPIEEVERRL 265
           CG Y  +ASI   +++A    YE  +EEVE++L
Sbjct: 183 CGIYIFDASIFDEIKKA----YERRLEEVEKQL 211


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
 Frame = +2

Query: 326  YERPDRPDK*RMCD-SSNNSTKDKNVISKYFTR-AADESLEDFKETKRIITSPKIIKPAR 499
            YE PD  DK  +     +N  +D N+  +      +DES+ DFKE K +     +    R
Sbjct: 1403 YEGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVSDFKERKLLEKQNTVSISER 1462

Query: 500  K--QRKNGKRI---CKQKD 541
            +  Q K  K I   CK  D
Sbjct: 1463 RELQLKTAKEILSNCKHLD 1481


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 857 WFSISEREISYTVFYFXDFFXCXILVSGTTKPYSCNV 747
           W  +   + + + F+    F   ILV  T KPY CN+
Sbjct: 660 WLLVFGAKFTESYFFLSLSFRDPILVLSTMKPYLCNI 696


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 724 ERTKKIHATLQEYGFVVPETKI 789
           ER +K   TLQEY  V+P +K+
Sbjct: 174 ERGRKYFTTLQEYDHVIPASKL 195


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 532 LADSFSILSLFPGRLYNFRAGNDSLSFF 449
           L D  ++LS + GR+ NF++G DS S +
Sbjct: 185 LTDEQNMLSAYRGRIANFKSGWDSHSAY 212


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 518  KRICKQKDIRTSLKRKNNELIEFSKEFNNVCEKTGIDVD-SEQLQLAVALSKSLQAEPSD 694
            K +   +D+  SLK K+N +I    ++ +  E   ID   SE LQ+    +    +E S 
Sbjct: 1677 KVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQ 1736

Query: 695  VNPQNFRNPKKELKKYM 745
            V        K+  KK++
Sbjct: 1737 VILMTVTTKKEYYKKFL 1753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,187
Number of Sequences: 5004
Number of extensions: 62600
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)