Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_N10
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 169 2e-42
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 48 1e-05
10_08_0870 - 21178136-21178534 30 2.0
09_02_0327 - 7284829-7284889,7284946-7286126 30 2.0
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 30 2.0
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 28 8.1
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 8.1
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 169 bits (412), Expect = 2e-42
Identities = 78/151 (51%), Positives = 100/151 (66%)
Frame = +3
Query: 393 SILPSXNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLPSXXXXXXXXXX 572
S++ +LV V +TE+E KA AAE+ + DGP++EG F RPGKLSD P
Sbjct: 490 SLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYPNEQAARF 549
Query: 573 XXXXXXXXDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQV 752
DLSLI R G++Y+FALLTGY +PPAGV +REG +YNPYFPGGAI+M ++
Sbjct: 550 ANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKM 609
Query: 753 LFDEAAEYSDGTPATASQLAKDVATFLKWCS 845
L D A EY DGTPAT +Q+ KDV +FL W +
Sbjct: 610 LIDGAVEYEDGTPATEAQMGKDVVSFLSWAA 640
Score = 59.7 bits (138), Expect = 3e-09
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = +2
Query: 293 PWNHSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAF 406
PW H+G SS DHAS+RRG++VY QVC +CHS+ I++
Sbjct: 457 PWPHAGILSSYDHASIRRGHQVYTQVCASCHSMSLISY 494
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +3
Query: 741 MAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCS 845
M ++L D A EY DGTPAT +Q+ KDV +FL W +
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAA 35
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -2
Query: 261 ACTDCSSAKSRAPTPPPTTP 202
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 246 SSAKSRAPTPPPTTPKVDSHTFLFFV 169
+S SR P PPP P + H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 269 SLMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWT 147
S+MP QT Q+ LQ L+LP FLS+ W+
Sbjct: 506 SVMPTQTGHAQEARLQQLNLPHAMEILIAVSFLSLFLVIWS 546
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +3
Query: 402 PSXNLVNVTHTEDEAKAEAAEV-----MIKDGPDEEGNYFERP 515
P N+ N++ ++ +A + V +IKDG DE GN F P
Sbjct: 588 PLTNMANISLSDRDASSVIERVYVVGGLIKDGGDENGNLFTVP 630
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 276 LTHLTTLGITVAGSAPWTTLVSVGVMKFTNKSAR 377
L +L++ I VAG++ WT L V K TN+++R
Sbjct: 382 LQNLSSATIQVAGTSNWTKLEQKLVAKGTNRTSR 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,195,341
Number of Sequences: 37544
Number of extensions: 564227
Number of successful extensions: 2055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2046
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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