Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N05
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.5  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   4.6  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 298 WNVYRTFFVFLVFYTIFLYFCF 363
           W VY T+F     + IFLYF F
Sbjct: 888 WKVYWTYFKACSLFLIFLYFLF 909


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 660 FFTFTYFFHLSRIFNFFFTFVVRSKVVNMVSHKLLL 767
           FF F ++F L   F+F FT +  +    +  HK LL
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLL 142


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 187 FCKPFFLTVCFNYPFLLFLTFFAIP 261
           FC  FFLT C +  ++LF  F A+P
Sbjct: 313 FCF-FFLTACISALYILFGAFVALP 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,353
Number of Sequences: 5004
Number of extensions: 47950
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)