Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_N02
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   129   3e-30
Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   5.8  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  129 bits (311), Expect = 3e-30
 Identities = 62/80 (77%), Positives = 69/80 (86%), Gaps = 1/80 (1%)
 Frame = +2

Query: 98  MAP-RKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGG 274
           MAP RK K  +E+  V+LGPQ   GE +FGVAHIFASFNDTFVH+TD+SGRETI RVTGG
Sbjct: 1   MAPARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGG 60

Query: 275 MKVKADRDEASPYAAMLAAQ 334
           MKVKADRDE+SPYAAMLAAQ
Sbjct: 61  MKVKADRDESSPYAAMLAAQ 80


>Z72508-7|CAA96642.1|  336|Caenorhabditis elegans Hypothetical
           protein F28H7.11 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 377 IVNKFSFYNVHHILSALFYFSIFSQRCNLILCTVFVHFTLF 499
           ++ K ++ N+      LFYFSIF+  C+  LC  FV   +F
Sbjct: 28  MIMKDTYLNMGSYKYLLFYFSIFNMSCS--LCDTFVPICIF 66


>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 385 QVLFLQCSSYFVSPLLLFNLFTKMQFNFMYSFCTFYSVYKNILVGGNLL 531
           Q+ F++C S F+ PLL+F + T    N +  +   +  +  +L+ GN++
Sbjct: 377 QIQFIKCLSLFIEPLLVFLICTS---NTLEEWRIVFLTHGILLIAGNII 422


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -1

Query: 476 LYIKLNCIFVKRLKSRRGLTKYDEHCRKRTCLQYNLN 366
           ++++L  IFV++LK     ++YD+  ++  C + N N
Sbjct: 10  VFVRLYSIFVEQLKMTNLQSRYDDELKRCYCTRRNCN 46


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 404 VHHILSALFYFSIFSQRCNLILCTVFVHFTLFIKIY 511
           +HH LS  F F+ +SQ   L    VF + T  + +Y
Sbjct: 269 IHHFLSLSFAFTFYSQNFALHRWIVFFNLTAHVFLY 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,832
Number of Sequences: 27780
Number of extensions: 397820
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)