Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_N01
(1011 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.99
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 31 0.99
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 31 0.99
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 31 0.99
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 31 0.99
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 31 1.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.3
Z73905-3|CAA98111.3| 357|Caenorhabditis elegans Hypothetical pr... 29 5.3
U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical pr... 29 5.3
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 5.3
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 5.3
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 5.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 7.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 7.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 7.0
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical pr... 28 9.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 28 9.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 9.2
AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical ... 28 9.2
AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 31.5 bits (68), Expect = 0.99
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 763 QPXXXPPXHPXXXXPPLPXXPXQPPXPP 846
+P PP P PP P P PP PP
Sbjct: 140 EPVTQPPCQPCPGGPPGPAGPAGPPGPP 167
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 31.5 bits (68), Expect = 0.99
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 763 QPXXXPPXHPXXXXPPLPXXPXQPPXPP 846
+P PP P PP P P PP PP
Sbjct: 140 EPVTQPPCQPCPGGPPGPAGPAGPPGPP 167
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 31.5 bits (68), Expect = 0.99
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 763 QPXXXPPXHPXXXXPPLPXXPXQPPXPP 846
+P PP P PP P P PP PP
Sbjct: 140 EPVTQPPCQPCPGGPPGPAGPAGPPGPP 167
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 31.5 bits (68), Expect = 0.99
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 763 QPXXXPPXHPXXXXPPLPXXPXQPPXPP 846
+P PP P PP P P PP PP
Sbjct: 140 EPVTQPPCQPCPGGPPGPAGPAGPPGPP 167
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Frame = -2
Query: 863 WXGXVWGGXG--GXXGXXGSGGXXXXGXXGGXXXG 765
W G WGG G G G G GG G GG G
Sbjct: 35 WGGNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWG 69
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 848 WGGXGGXXGXXGSGGXXXXGXXGG 777
WGG GG G G GG G GG
Sbjct: 247 WGGGGGGRGYGGGGGGGGYGYGGG 270
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 766 PXXXPPXHPXXXXPPLPXXPXQPPXPP 846
P PP P PP P P PP PP
Sbjct: 44 PCPPPPICPPQFCPPPPMCPPPPPPPP 70
>Z73905-3|CAA98111.3| 357|Caenorhabditis elegans Hypothetical
protein C32C4.3 protein.
Length = 357
Score = 29.1 bits (62), Expect = 5.3
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 254 PHWMXPLLLSLYGSVTSAL--XFALL*NND-MLIKLFIXYAFPMLXSSIFHXK 403
PH + PLLLS+ T+ + L ++D L+KLF A P S+F+ K
Sbjct: 144 PHQLDPLLLSISSESTALVRQKIGLCHHHDCKLLKLFGFDAIPFTTESLFYEK 196
>U70852-8|ABB51182.1| 868|Caenorhabditis elegans Hypothetical
protein F45E4.7a protein.
Length = 868
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Frame = +1
Query: 778 PPXHPXXXXPPL---PXXPXQPPXPPHT 852
PP P PP+ P P PP PPH+
Sbjct: 26 PPLSPHHDLPPMEPSPISPDPPPLPPHS 53
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+P P PP P + P
Sbjct: 68 PPICPPPPPPPMPCPPPPPPMPRPSCP 94
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+P P PP PP + P
Sbjct: 94 PPPKPTIRPPPIPASP--PPRPPASEP 118
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+P P PP PP + P
Sbjct: 316 PPPKPTIRPPPIPASP--PPRPPASEP 340
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+ P PP PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+ P PP PP P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCP 769
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 7.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP+ P PP PP P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCP 352
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 754 TKIQPXXXPPXHPXXXXPPLPXXPXQPP 837
T+I P PP P PP P P Q P
Sbjct: 346 TEIPPIISPPAPPPPPPPPPPPPPPQTP 373
>Z69658-1|CAA93481.1| 418|Caenorhabditis elegans Hypothetical
protein C36H8.1 protein.
Length = 418
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHTXP 858
PP P PP P PP PP P
Sbjct: 178 PPPRPPPQEPPKPVEQAAPPPPPAPMP 204
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = -2
Query: 863 WXGXVWGGXGGXXGXXGSGGXXXXGXXGGXXXG 765
W G GG GG G GG G GG G
Sbjct: 81 WGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGG 113
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 805 PPLPXXPXQPPXPPHTXP 858
PP P P PP PPH P
Sbjct: 133 PPPPPPPHYPPPPPHYPP 150
>AL034392-5|CAE17989.1| 134|Caenorhabditis elegans Hypothetical
protein Y40B1A.5 protein.
Length = 134
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 778 PPXHPXXXXPPLPXXPXQPPXPPHT 852
PP H PP P QPP PP +
Sbjct: 88 PPPHGLGPPPPPPHYYTQPPPPPQS 112
>AC024776-1|AAK68468.1| 338|Caenorhabditis elegans Hypothetical
protein Y41D4B.18 protein.
Length = 338
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +3
Query: 759 NSTAXXXXPXPXXXPPXTPXPTXXTTXTPPHXXXPKXS 872
+STA P P P T PT TT PP PK S
Sbjct: 238 SSTASTSTPAPTNLPTTTGAPTNSTT-NPPTATSPKTS 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,534,832
Number of Sequences: 27780
Number of extensions: 180439
Number of successful extensions: 959
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2657408452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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