Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M21
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    28   2.1  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   6.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   8.6  

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 546 KRQQTRPFYGSWPFA-GLLLTCSFLRYRLILW 454
           K  ++  + G W    GLL TCSF   R+ LW
Sbjct: 276 KEHESMCYGGDWRHTDGLLATCSFYDKRVCLW 307


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 482 EHVSKRPAKGQEP*KG-RVCWRFSIGLRPPDEHHKNRRSSQ 601
           ++V K P    EP K  R C   + GLR  +EH  ++ S+Q
Sbjct: 177 DNVLKVPECKPEPGKKKRACKNCTCGLREMEEHESSKTSAQ 217


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 572 EHHKNRRSSQRWRNPTGL*RYQAF----PPGSSLVRSPVPTLPLTGY 700
           ++HKNR+S+     P GL  Y+A     PPG     +      L GY
Sbjct: 389 DYHKNRKSNFNKPGPDGLGLYKAVLLSGPPGIGKTTAAHLVAKLEGY 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,990
Number of Sequences: 5004
Number of extensions: 52554
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)