Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M18
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   2.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   2.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   2.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   4.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.6  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 177 CSVSLIFSTARNLRSPL-MFHKNIQFF 100
           C V  IFST+++LR+P  MF  ++  F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/46 (19%), Positives = 19/46 (41%)
 Frame = -3

Query: 719 IQFGDCLEIWTAQTCINSFPYNMINV*FLRNLFSNFSKFIIIGFVH 582
           + +G C   W  + C+N +  + ++         NF K   +  V+
Sbjct: 96  LPWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVN 141


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 177 CSVSLIFSTARNLRSPL-MFHKNIQFF 100
           C V  IFST+++LR+P  MF  ++  F
Sbjct: 76  CCVIWIFSTSKSLRTPSNMFIVSLAIF 102


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 125 ISGDRKFLAVENIRETEHWHHLRLWDGFTSRKYSRRGK 238
           I+GD K++   NI+    W   R     TS+    R K
Sbjct: 29  ITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIHRKK 66


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 125 ISGDRKFLAVENIRETEHWHHLR 193
           I+GD K++   NI+    W   R
Sbjct: 150 ITGDEKWVVYNNIKRKRSWSRPR 172


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 692 WTAQTCINSFPYNMINV*FLRNLFSNF 612
           W+A  CI+     M+ +   RN++ NF
Sbjct: 399 WSAFLCISLVYIIMLIIFIPRNIYENF 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,254
Number of Sequences: 438
Number of extensions: 5364
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)