Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M17
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    38   0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.97 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/60 (33%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = +2

Query: 764 PRPXGGXPXGLSSXPPXXPPXXXAGXXXGAPXPXXSXXXPP-GVXLPAXPPXXPGGGAXP 940
           P P    P    S PP  PP    G     P P  +   PP    +PA PP  P   A P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 26/86 (30%), Positives = 27/86 (31%), Gaps = 1/86 (1%)
 Frame = -1

Query: 835 GXXXGGXXGGXGXKPPGTXPXXPXXXXGGDXPPXGXXXXXXXXXXXXXXXXXXGKXRXGG 656
           G   GG  GG G  PPG          GG+    G                       GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 655 PXGG-XGXGGGPXXKRQXXGGSPGPG 581
             GG  G GGGP       GG  GPG
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +3

Query: 738 GGXSPPXXXXGXXGXVPGGFXPXPPXXPPXXXPGGXR-XPPSP 863
           GG  PP    G  G  P    P PP  PP    GG R   P+P
Sbjct: 759 GGPPPPPPPPGVAGAGP----PPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 576 GXPGPGEPPXXWRXXXGPPPXPXPP 650
           G P P  PP        PPP P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 582  PGPGEPPXXWRXXXGPPPXPXPPXGPP 662
            P P E P   +   G PP P P   PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/55 (25%), Positives = 17/55 (30%)
 Frame = +2

Query: 767  RPXGGXPXGLSSXPPXXPPXXXAGXXXGAPXPXXSXXXPPGVXLPAXPPXXPGGG 931
            RP    P  +S+  P  PP          P P      PP     +  P  P  G
Sbjct: 1693 RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 576 GXPGPGEPPXXWRXXXGPPPXPXP 647
           G P P  PP  +     PPP P P
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,596
Number of Sequences: 5004
Number of extensions: 20559
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)