Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M15
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.67 
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    29   0.89 
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   3.6  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   3.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   4.7  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 506 PGPYGEKGLQGLAGEGGVN-SRGAKGDQXXXXXXXXXXXXXNPQGWRGDSGLPGDEGDQG 682
           PGP G  G  G  GEG  +   G  G                P G+ G  GL G  G  G
Sbjct: 202 PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG--GLGGFGG--G 257

Query: 683 PMGLKGEPGYSGDLG 727
           P G  G PG  G  G
Sbjct: 258 PGGFGGGPGGHGGPG 272


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = +2

Query: 254 YGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQG 394
           YG+    G  G     G +G    +G  G     G+YG     G  G
Sbjct: 58  YGSSNNYGNYGSSNNYGSYGASNTYGSNGSSNNYGNYGATNSNGDAG 104


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 144 GLQKNIRRAAGTRCSA*RRARAGPDMAAPTTTQNLKEF 31
           G +KN R+AAG   +    A AG +  A TT  N   F
Sbjct: 290 GAKKNQRKAAGKADNTSVAAAAGSEALAATTATNASPF 327


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 267 DLKEELVYPVCRETGENAAISGTKENEEPKDLMADEET 380
           D++++ +Y +CR T ENA +  T   +  +D++  E T
Sbjct: 63  DIEKKTIY-LCRPTYENAKLVATHVRQFQRDMLRIEST 99


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/87 (21%), Positives = 39/87 (44%)
 Frame = +3

Query: 333 TKENEEPKDLMADEETKDHRVCLG*KEYLDSQDWTAVVVLMEFKAFPVYKVHLVIEVFQD 512
           T+ +EEP+D  A +   DHR+  G      S+D+  ++  + F       +H   E + +
Sbjct: 181 TEVSEEPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFS-----HLHCTWEPYNN 235

Query: 513 LTEKKAFKAWQEKVELTQEVQKEIXGD 593
           ++  +  K     ++    + +EI  D
Sbjct: 236 ISMIRGSKKVDNHIKQVILLDREIRED 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,857
Number of Sequences: 5004
Number of extensions: 62058
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)