Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M14
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...   161   9e-41
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    35   0.018
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    28   1.5  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.5  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   3.5  

>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score =  161 bits (392), Expect = 9e-41
 Identities = 79/167 (47%), Positives = 112/167 (67%)
 Frame = +3

Query: 366 MGKQRKTRKIVEKRFAKMKKMISPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSAL 545
           MGK + TRK     FA++K++I+  D R++  ++ + K+K   +  ++  RE+PQ +S L
Sbjct: 1   MGKAKTTRK-----FAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELV--REIPQMASNL 53

Query: 546 FFQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEKLGR 725
           FFQ+N  LGPPYHV+IDTNFINF ++ K+D+ + +M CLYAK IP I+DCV+ ELEKLG 
Sbjct: 54  FFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGI 113

Query: 726 KYRVALRIIKDPRI*EDSLSSQRYIC**LFSTKSSQHKCYIVATNDK 866
           +YR+ALRI KD R      + +          +  QHKCY+VATNDK
Sbjct: 114 RYRIALRIAKDERFERLPCTHKGTYADDCIVQRVMQHKCYLVATNDK 160


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 543 LFFQYNMQLG--PPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEK 716
           L   Y +  G   PY VL+D +F+    + K+DI   +   +     P IT C + +L  
Sbjct: 12  LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71

Query: 717 LGRKYRVALRIIK 755
              + +  +RI K
Sbjct: 72  KSDELKQEIRIAK 84


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 725 SSKFFQFSKDTISNIWYAFSIKTIHHILY-YIKFVLY 618
           S  FF FS+D      Y F IKTIHH  + +++ +LY
Sbjct: 364 SGSFFYFSRD------YRFIIKTIHHSEHKFLREILY 394


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 369 GKQRKTRKIVEKRFAKMKKMISPSDSR 449
           G    +RK++ KR AK   M+  SD+R
Sbjct: 135 GPLSNSRKLIPKRSAKFSSMVGSSDTR 161


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 492 VDPHVIKIREVPQTSSALFFQYNMQLGPPYH 584
           VD   I+IR V  + +A +F   + LGPPYH
Sbjct: 16  VDEPAIQIRLV--SGNAEYFGTELALGPPYH 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,682
Number of Sequences: 5004
Number of extensions: 74802
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)