Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M14
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0419 - 2990827-2990834,2991432-2991510,2991594-2991650,299...   153   1e-37
02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630...    33   0.30 
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    31   1.6  
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    29   6.5  
11_01_0739 - 6229029-6229856                                           28   8.6  
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886...    28   8.6  

>06_01_0419 -
           2990827-2990834,2991432-2991510,2991594-2991650,
           2992307-2992394,2992626-2992698,2993020-2993089,
           2993824-2993929,2994027-2994092,2994175-2994248
          Length = 206

 Score =  153 bits (372), Expect = 1e-37
 Identities = 85/164 (51%), Positives = 105/164 (64%), Gaps = 10/164 (6%)
 Frame = +3

Query: 405 RFAKMKKMISPSDSRIKNSERSEPKKKKPVDPHVIKI-REVPQTSSALFFQYNMQLGPPY 581
           +FA +KK+I+    +    +   PKKK   D    K+ R VPQ SSALFF YN  LGPPY
Sbjct: 10  KFAAVKKIITKKTIQKYKEDVLNPKKK---DNEKEKLGRNVPQVSSALFFSYNTALGPPY 66

Query: 582 HVLIDTNFINFSIKNKL---------DIIQNMMDCLYAKCIPYITDCVLGELEKLGRKYR 734
            V++DTNFINFSI+NKL         D+ + MMDCLYAKC P ITDCV+ ELEKLG+KYR
Sbjct: 67  RVIVDTNFINFSIQNKLNASLTPMQLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYR 126

Query: 735 VALRIIKDPRI*EDSLSSQRYIC**LFSTKSSQHKCYIVATNDK 866
           VALRI KDPR    + + +          + +QHKCYIVAT D+
Sbjct: 127 VALRIAKDPRFQRLACTHKGTYADDCIVERVTQHKCYIVATCDR 170


>02_03_0164 -
           15862166-15862366,15862443-15862508,15862754-15863029,
           15864869-15864989,15865091-15865368
          Length = 313

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
 Frame = +3

Query: 576 PYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIP---YITDCVLGELEKLGRKYRVAL- 743
           PY VL+D  F++  + + L    + +  L +   P   + + CVL EL +LG+ +  A  
Sbjct: 25  PYRVLVDGTFVHHLLSHSLLPADDALQSLLSASRPPPLFTSKCVLAELRRLGKSHADAFD 84

Query: 744 --RIIKDPRI*EDSLSSQRYIC**LFSTKSSQHKCYIVATND 863
              ++   +   D + S       L   K+ +H  + VAT D
Sbjct: 85  AAALLATAKCEHDKVVSAVDCVLSLIGEKNPEH--FFVATQD 124


>08_02_0501 +
           17836948-17837373,17837857-17839184,17839270-17839380,
           17839719-17839998,17840275-17840396,17840451-17840556,
           17840814-17841020,17841130-17841255,17841719-17841817,
           17842265-17842456,17842555-17843073
          Length = 1171

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/49 (36%), Positives = 32/49 (65%)
 Frame = +2

Query: 260 TSYILFVGCMVTVSVYVSIKIEVKVFLNTNILNHYNGQTTKNEENSREK 406
           TS +L+V C+V +S+Y+SI+I VKV  +T I    N    ++++ +R +
Sbjct: 373 TSLMLYV-CLVPISLYISIEI-VKVLQSTFINQDQNMYCEESDKPARAR 419


>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 411 AKMKKMISPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSALFFQYNMQLGP 575
           A    ++ P  S IK   +SEP+KK+ +D  VI+ + +   S      +N++  P
Sbjct: 788 ASTSVLLDPKCSNIKGRHKSEPRKKRLID--VIRSKGLVTCSGCGSHDHNIRTCP 840


>11_01_0739 - 6229029-6229856
          Length = 275

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 245 LGAHCTSYILFVGCMVTVSVYVSIKIEVKVFLNTNILNHYNGQTTKNEENSREKICKNEK 424
           +GA+ T   +++   + V V V +     VFL    +NH+N    K  E ++ +  + ++
Sbjct: 37  MGAYATGSSMYLRTFIIVLVLVLVAFVGVVFL---AINHFNKLHKKKMEKNKRQPAQQQQ 93

Query: 425 NDQPQRLS 448
              P++ S
Sbjct: 94  PPSPKKSS 101


>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
            12288695-12288757,12288851-12288913,12289268-12289318,
            12289538-12289617,12290078-12290164,12290349-12290435,
            12290889-12290975,12292106-12292308,12292756-12292922
          Length = 1059

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 372  KQRKTRKIVEKRFAKMKKMISPSDSRIKNSERSEPKK 482
            K ++ R+IVEK     KK I   +   +N  ++ PK+
Sbjct: 989  KPKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKR 1025


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,233,106
Number of Sequences: 37544
Number of extensions: 387084
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)