Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M13
         (1835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         33   0.98 

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 32.7 bits (71), Expect = 0.98
 Identities = 28/114 (24%), Positives = 32/114 (28%), Gaps = 1/114 (0%)
 Frame = +2

Query: 176 PNPXXXXPXPXXTSRPKNXTKXQXXXXPTXAXXTXQRRXTPXXXXPXHXXQPNRXNPXXX 355
           P P    P P         T       PT      Q + TP    P       +  P   
Sbjct: 166 PTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPN 225

Query: 356 PXPXXXQQXXTEEXTISKHTXXTXQP-PKXXPXRPXNTPQTKXPXXHTTTXTHK 514
           P P    Q         K    T +P PK  P  P   PQ K      T  T+K
Sbjct: 226 PPPTYKPQPKPNPPPTYKPAPPTYKPQPKPNPP-PTYKPQPKPTPTPYTPPTYK 278



 Score = 30.7 bits (66), Expect = 3.9
 Identities = 26/104 (25%), Positives = 32/104 (30%), Gaps = 1/104 (0%)
 Frame = +2

Query: 176 PNPXXXXPXPXXTSRPKNXTKXQXXXXPTXAXXTXQRRXTPXXXXPXHXXQPNRXNPXXX 355
           P P    P P         T       PT      Q + TP    P +  QP        
Sbjct: 114 PTPTPPKPTPPTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPP---PTYKPQPKPTPTPYT 170

Query: 356 PXPXXXQQXXTEEXTISKHTXXTXQPPKXXPX-RPXNTPQTKXP 484
           P P         + T + +T  T  PP   P  +P  TP T  P
Sbjct: 171 PTPTPPSYKPQPKPTPTPYTP-TPTPPSYKPQPKPTPTPYTPTP 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,061,655
Number of Sequences: 37544
Number of extensions: 213082
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 6071396100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)