Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M09
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    77   3e-15
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    52   9e-08
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    29   0.69 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.8  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   6.4  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   8.5  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
 Frame = +3

Query: 168 KYIIDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ 347
           K IID D G DDA+  L+AI S +     EL+ +TT  GN      T N  Q+L LAGR 
Sbjct: 2   KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57

Query: 348 DIPIYRGSAEALV-SPFGNVWYYGLDGLGDNNDSYTDLFPPA----EESAAFALIENXKK 512
           DIP+Y GS + L+ +P      +G  G          L PP+    E  A   +I+  + 
Sbjct: 58  DIPVYAGSNKPLLRAPITATHVHGASGF-----EGAVLPPPSRKENEGHAVDFIIDTLRN 112

Query: 513 YE-GSLSVVTIGTLTNIAVAMKYDPKFFGPPFAFVYRSGTF 632
            E G++++ TIG LTNIA+A+   P+        V  +G F
Sbjct: 113 NEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAF 153


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
 Frame = +3

Query: 177 IDNDAGGDDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIP 356
           ID D G DD +A+ +A  +       +++ ++T HGNT  E  T N   +++L   QD+ 
Sbjct: 21  IDCDPGHDDVVALTLAACAGHC----KILGVSTVHGNTTLEFTTKNALAVMELLN-QDVD 75

Query: 357 IYRGSAEALVSPFGNVWY-YGLDGLGDNNDSYTDLFPP--AEESAAFALIENXKKYEGSL 527
           ++ G+A+ L+       + +G +GL     S    +P   A   A FA+      Y   +
Sbjct: 76  VHAGAAKPLMRESAFATHIHGTNGLA--GISLLPDYPKKKATPDAVFAMYTTISNYPEPV 133

Query: 528 SVVTIGTLTNIAVAMKYDPKFFGPPFAFVYRSGT 629
           ++V  G LTNIA+ +   P        F++  G+
Sbjct: 134 TLVATGPLTNIALLLATYPSVTDNIERFIFMGGS 167


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 405 WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENXKKYEGSLSVVTIGTLTNIAVAMKYDP 584
           W    +    NN+SY       + SAA  +I+  K     +++V  G +TN+A+A+   P
Sbjct: 114 WQPEYETANTNNESY---IYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWP 170


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 423 GLGDNNDSYTDLFPPAEESAAFALIENXKKYEGSLS 530
           G  +N+   TD++P A + AA A  ++  + E SLS
Sbjct: 809 GYSENDIGGTDIYPFALQGAALAAAKDFSRREASLS 844


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = +3

Query: 231 SEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQ-DIPIYRG--SAEALVS---P 392
           S  +F    L  +TT   ++ + Q+++NN Q   L  RQ    +  G  S  AL+    P
Sbjct: 308 SPNFFFPTPLNIMTTTQDSSRDVQLSLNNVQSQALNNRQRRNQLLPGVPSTSALLDGRRP 367

Query: 393 FGNVWYYGLDGLGDNNDSYTDLFPPAEESAAFAL 494
              V Y+G+    DN D   +   P EE   F L
Sbjct: 368 ENVVDYHGIASFFDNFDKKINKL-PREEDILFGL 400


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 303 LAPRLCSRGPLSERSVL 253
           LAP LCSR PL    VL
Sbjct: 304 LAPELCSRAPLQTTDVL 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,605
Number of Sequences: 5004
Number of extensions: 70211
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)