Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_M09
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 74 1e-13
03_04_0131 - 17551438-17551549,17552080-17552215,17552361-175524... 71 1e-12
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769... 61 1e-09
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386... 30 2.9
11_06_0001 + 19132777-19133067,19133082-19133381 29 5.1
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 29 5.1
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 28 8.9
>08_02_1567 -
27916010-27916118,27916256-27916391,27916675-27916771,
27916866-27916970,27917058-27917240,27917764-27917823,
27917909-27918096,27919234-27919294
Length = 312
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Frame = +3
Query: 198 DDAMAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIPIYRGSAE 377
DD+M IL+A + E+I LTT GNT + T N + + AG ++P+ GSAE
Sbjct: 45 DDSMTILMAFRAPTV----EIIGLTTIFGNTTTKNATQNALLLCERAGHPEVPVAEGSAE 100
Query: 378 ALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENXKKYEGSLSVVTIGTL 551
L V + +G DGLG N +E+AA ++ ++ G +S++ +G L
Sbjct: 101 PLKGGEPRVADFVHGSDGLG-NLFLPAPTSKKVDENAAEFMVNKVSQFPGEVSILALGPL 159
Query: 552 TNIAVAMKYDPKFFGPPFAFVYRSGTF 632
TN+A+A+K DP F V G F
Sbjct: 160 TNVALAIKRDPSFASKVKKIVVLGGAF 186
>03_04_0131 -
17551438-17551549,17552080-17552215,17552361-17552468,
17552803-17552899,17553003-17553107,17553207-17553392,
17553679-17553738,17553883-17553990
Length = 303
Score = 70.9 bits (166), Expect = 1e-12
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Frame = +3
Query: 207 MAILIAILSEKYFDGPELIALTTGHGNTDEEQVTINNQQILKLAGRQDIPIYRGSAEALV 386
MAI +A+ S + EL+ LTT GN T N +L+ GR DIP+ GS +
Sbjct: 1 MAIFVALRSPEV----ELLGLTTIFGNVYTTLATRNALHLLEAVGRTDIPVAEGSHVTIK 56
Query: 387 SPFG---NVWYYGLDGLGDNNDSYTDLFPPAEESAAFALIENXKKYEGSLSVVTIGTLTN 557
+ +G DGLG+ N P ++SAA L+E Y G ++VV +G LTN
Sbjct: 57 KATKLRIASFVHGSDGLGNQNFP-PPTGKPLDQSAAAFLVEQANLYPGQVTVVALGPLTN 115
Query: 558 IAVAMKYDPKF 590
+A+A++ DP F
Sbjct: 116 LALAIELDPSF 126
>09_06_0330 -
22376394-22376505,22376609-22376744,22376835-22376942,
22377056-22377152,22377490-22377594,22377699-22377884,
22378312-22378371,22378545-22378781
Length = 346
Score = 61.3 bits (142), Expect = 1e-09
Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +3
Query: 336 AGRQDIPIYRGSAEALVSPFGNV--WYYGLDGLGDNNDSYTDLFPPAEESAAFALIENXK 509
AGR ++P+ GSAE L +V + +G DGLG+ + E+SAA L++
Sbjct: 83 AGRPEVPVAEGSAEPLKGGKPHVADFVHGSDGLGNTSFPDPTTTNKVEQSAAEFLVDKVS 142
Query: 510 KYEGSLSVVTIGTLTNIAVAMKYDPKFFGPPFAFVYRSGTF 632
+ G +SV+ +G LTNIA+AMK D F V G F
Sbjct: 143 ESPGEISVLALGPLTNIALAMKKDSSFASKVKRIVVLGGAF 183
>03_06_0015 -
31036091-31036202,31037839-31037916,31038408-31038655,
31038744-31038792,31038919-31039890,31040059-31040894
Length = 764
Score = 29.9 bits (64), Expect = 2.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 54 VSQNPCCRADVYQCTSYFWIVFSFIDLLLPLSATTN 161
V++N C +A YQC Y IV + +LLPL+ ++
Sbjct: 524 VAENICNKAAEYQCNDYSQIVCNQQTVLLPLNKASH 559
>11_06_0001 + 19132777-19133067,19133082-19133381
Length = 196
Score = 29.1 bits (62), Expect = 5.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 123 FIDLLLPLSATTNRPKYIIDNDAGGDDAMAILI 221
F+D L+ + R K II ND G D A+A LI
Sbjct: 87 FLDYLITTANDNLRSKEIIKNDLGSDKAVADLI 119
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 267 LTTGHGNTDEEQVTINNQQILKLAGRQDIPIYRGSAEAL 383
L +G+G + + I IL + GR DIP+ RGS AL
Sbjct: 543 LVSGNGWANVASIDIV-YDILHMMGRDDIPVGRGSTSAL 580
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 10 PLPXKTIGNXLRFFEFLKIPVVEQTCTSAQVIFGSSFRLS 129
PLP K G LRFF V + A +I G+ F S
Sbjct: 437 PLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFTSS 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,977,532
Number of Sequences: 37544
Number of extensions: 476814
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -