Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M09
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 78  ADVYQCTSYFWIVFSFIDLLLPLSATT 158
           A + +  S+F ++F++I +L+ L  +T
Sbjct: 405 AAIIEWLSFFIVIFTYIIILITLVPST 431


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 150  ATTNRPKYIIDNDAGGDDAMAILIAILSEKYFDGP 254
            ATT   + + +N+ G  D    +  I +E+   GP
Sbjct: 945  ATTYHLRIVAENEIGASDPSDTVTIITAEEAPSGP 979


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 680 TSIKALNSGFGSSLLYK-CPAPIYKCERRSK 591
           TSI  L  G+G+ ++Y    A + K ++  K
Sbjct: 478 TSINVLGDGYGAGIVYHLSKAELDKMDKEKK 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,511
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)