Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M08
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   301   6e-83
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.5  
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    27   2.7  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.7  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   4.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  301 bits (740), Expect = 6e-83
 Identities = 148/243 (60%), Positives = 178/243 (73%)
 Frame = +1

Query: 103 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 282
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 283 TLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 462
           TLHPAVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 463 GGVTLLRAAAKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTSDYD 642
           GGVTLLRAAAKNH RVT++ DPADY     +   +K    T   R   ALKAF  T+ YD
Sbjct: 123 GGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDK---LTQDDRNTYALKAFASTASYD 179

Query: 643 LAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGFINLCDALNA 822
            AI+DYFRKQY+ G  QLTLRYG NPHQ PAQ F  +  LP   L G+PG+INL DALN+
Sbjct: 180 AAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPGYINLMDALNS 239

Query: 823 WQL 831
           W L
Sbjct: 240 WPL 242


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 219 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 311
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 782 PFSVVIGKLSLVVNTWAGF*CGFIPYLK 699
           PFS + GK+ LVVNT +   CGF P  K
Sbjct: 18  PFSNLKGKVVLVVNTASK--CGFTPQYK 43


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 473 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 378
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
 Frame = +1

Query: 664 RKQYSPGQAQLTLRYGMNP------HQKPAQVFTTRDSLPITTLNGAPGFINLCDALNAW 825
           R  Y P Q  LT  +G+NP      +    ++     SL +  ++  PGF +  D  + W
Sbjct: 118 RDVYPPTQKSLTGDFGVNPEPTVMINSSAVEIVENGISLQLNVID-TPGFGDFIDNTDCW 176

Query: 826 Q 828
           Q
Sbjct: 177 Q 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,601
Number of Sequences: 5004
Number of extensions: 63553
Number of successful extensions: 193
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)