Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_M08
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 167 1e-41
10_08_0415 - 17761594-17762382 30 2.1
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 30 2.1
11_02_0149 - 8801675-8804332 29 4.9
03_05_0975 + 29333960-29334171,29336442-29336523,29336663-293366... 29 4.9
10_01_0164 + 1863890-1866253 29 6.5
01_06_1252 - 35748000-35748173,35748243-35748375,35749771-357498... 29 6.5
02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853 28 8.6
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 8.6
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 167 bits (405), Expect = 1e-41
Identities = 104/251 (41%), Positives = 136/251 (54%), Gaps = 22/251 (8%)
Frame = +1
Query: 97 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGR 276
K AL+S+SDKT L L L G +I++GGTA++L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 277 VKTLHPAVHAGILARLSDSDQ-EDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVEN 453
VKTLHP+VH GILAR + + VVV NLYPF V+ ++ D +EN
Sbjct: 106 VKTLHPSVHGGILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFEDGIEN 165
Query: 454 IDIGGVTLLRAAAKNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGTRQRLALKAFTHTS 633
IDIGG T++RAAAKNH V V+ D DY A+++ ++ + Q R+ LA KAF H +
Sbjct: 166 IDIGGPTMIRAAAKNHKDVLVMVDHEDYPALLEYLQGKQDDQQ---FRKMLAWKAFQHVA 222
Query: 634 DYDLAISDYFRKQYS---------------------PGQAQLTLRYGMNPHQKPAQVFTT 750
YD A+S++ KQ + P + TLRYG NPHQK A F
Sbjct: 223 SYDSAVSEWLWKQSNKDIITLSCSHVGDVFPPNFTVPLSLKSTLRYGENPHQKAA--FYG 280
Query: 751 RDSLPITTLNG 783
SL + G
Sbjct: 281 DKSLSVVNAGG 291
>10_08_0415 - 17761594-17762382
Length = 262
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 186 WRYRHGASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 329
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 30.3 bits (65), Expect = 2.1
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Frame = +1
Query: 136 LSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI- 312
L LA+ L C + +I G + + V D+ E G KT +V A +
Sbjct: 316 LQLAEDLDACPVWVINDGASLNEQIPSATIAAFVKDVVDGIEFARGDPKTTWGSVRAAMG 375
Query: 313 ------LARLSDSDQEDMK---RQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 462
L +S +QE K ++KY + YP ++ +S D++ AV D+
Sbjct: 376 HPEPFPLYYISVGNQECSKPYYKEKYVKFYSAIKASYPDIKIISSCDISSISAVNPADL 434
>11_02_0149 - 8801675-8804332
Length = 885
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 70 SKQNMASNGKLALLSVSDKTGLLSLAKSLSECGLQL 177
S QN+ S G +ALL+ ++ T + S + S +E G QL
Sbjct: 553 SCQNVTSMGVMALLATAEPTSMPSSSTSSNETGSQL 588
>03_05_0975 +
29333960-29334171,29336442-29336523,29336663-29336695,
29336803-29336923,29337398-29337577,29337578-29337670,
29338459-29338566,29338654-29338830,29338937-29338992,
29339071-29339155,29339994-29340535
Length = 562
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 591 HKAEISPEGVHSY-FGL*PRHIGLLPQAILARASPTDLKIRYEPTSEAGPGIHDQRQLA 764
H A S G H Y F L ++ QA+L++ S T L P + +G G QR+ A
Sbjct: 426 HSASTS-SGSHWYIFLLSSSNLSFFSQAVLSQLSSTTLSSELSPEAPSGGGRRRQRRAA 483
>10_01_0164 + 1863890-1866253
Length = 787
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 18 DXTIWEFLKILSYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVGMW 167
D TI E K LSY + LE E V W + Q F + +E +W
Sbjct: 512 DWTITESCK-LSYKITLEDGEVDVYWLNTKDQEFSYEQLIFHKEELATVW 560
>01_06_1252 -
35748000-35748173,35748243-35748375,35749771-35749847,
35750465-35750509,35750584-35750679,35751125-35751130,
35751259-35751388,35751510-35751706
Length = 285
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 6 YSXTDXTIWEFLKILSYTVVLEQTEHGVKWKTSSSQRFRQDGSTLVSKEPVGMWPAVDCQ 185
Y + IW+ +I+ + + T + + +T SQ R G +E A+D Q
Sbjct: 186 YEVSREQIWDTPQIMELSPWIPYTINRIWKETHGSQDIRIQGRP---REAANS--ALDWQ 240
Query: 186 WRYRHGASERRPHSSRCV-GHHE 251
W +H + + +R V GHHE
Sbjct: 241 WPSKHSSLASNFYGTRVVGGHHE 263
>02_05_0694 - 30984408-30985160,30985357-30985487,30985586-30985853
Length = 383
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 655 DYFRKQYSPGQAQLTLRYGMN-PHQKPAQVFT 747
D QY PG + L L YG++ PH +P F+
Sbjct: 49 DVGNNQYLPGNSPLQLPYGIDFPHSRPTGRFS 80
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 456 DVLDRVRHGHVRLRYRLDE-RVQVTDHH 376
DVL +R GHV L Y L E DHH
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHH 714
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,890,186
Number of Sequences: 37544
Number of extensions: 481900
Number of successful extensions: 1669
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -