Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M05
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    28   2.1  
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce...    27   2.8  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.9  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 291 DEARKWGPPXHEGLRGFXIYFQSVNRNKKSICI 389
           D   K  PP  E  RG+ +YF+ V RNKK   +
Sbjct: 140 DPEHKGFPP--ELTRGYDLYFRPVTRNKKPFSV 170


>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
 Frame = -3

Query: 622 NSPPIAAAITSYPX---FFVYXPXGPKPVIAQYISLGLTVLSFSYPTS--IW-SSFPGMK 461
           N PP  + I  +     F+++    P+ V+ +  +  LT  ++ +     +W +  PGMK
Sbjct: 73  NPPPAISKIFQFSDETLFYIFYTM-PRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMK 131

Query: 460 FSTSTSHFFARSYIIFFPSCDLKSIQMLFLFLF 362
               T  F  R Y +FF     K I+  FL ++
Sbjct: 132 PLQRTPQF-ERGYYMFFDPIHWKRIKKDFLLMY 163


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 276 ESLSGDEARKWGP-PXHEGLRGFXIYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVL 452
           +S+  +  RK G  P H    G+ ++ QS NR  K +  D K  + ++I   +   C+V 
Sbjct: 6   KSIRRESLRKLGCLPDH----GWNLFVQSSNRYSKLLEADSKLFKAQRIEDTVLSICEVT 61

Query: 453 VEN 461
           +EN
Sbjct: 62  LEN 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,887
Number of Sequences: 5004
Number of extensions: 51688
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)