Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_M03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   0.68 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.6  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   6.3  
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    26   6.3  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   6.3  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   8.4  

>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 16/79 (20%), Positives = 37/79 (46%)
 Frame = -2

Query: 816 VFSVXIXTAALXIKSSISGHINRQKVH*DNRPWLWYLSRLPRQIYXMKLSLFLKVGQDVL 637
           +F++    A+L +  ++ GH++R  VH  +  W++++         M L L  +V    +
Sbjct: 161 LFNLLEGMASLLVVQAL-GHLSRWLVHNKSENWMFFILLNASSAISMSLYLLYRVSSFSI 219

Query: 636 ETPAFISIGSPFVVIGLVT 580
             P  + IG     + +++
Sbjct: 220 SNPNALMIGFSLATVIVIS 238


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -3

Query: 548 LPPSTLPRGQAHPLF----L*ARQAPSCG 474
           LPPS LPR   HPL       A+Q+PS G
Sbjct: 52  LPPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 400 TLATEIPQPYYSNMGTSEDWAYHTEPQEGACRAYKNKGC 516
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 896 WNLVPPLGGGERFX*LPIGLSPWQSVKF 813
           W LVP +  G      P  L+PW  ++F
Sbjct: 181 WKLVPAIASGNCVVLKPSELAPWSCLEF 208


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 227  HCAARNVVRACWKTGPATW*LLTIVVVNAGSHAQNI 120
            HC A N  ++ W+     W   T  ++  G H  NI
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNI 1708


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 233 IAHCAARNVVRACWKTGPATW 171
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,544
Number of Sequences: 5004
Number of extensions: 67590
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)