Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_M01
(1023 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain... 32 3.9
X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein. 32 3.9
M25730-1|AAA58428.2| 167|Homo sapiens alpha-1 type II collagen ... 32 3.9
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 32 3.9
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 32 3.9
BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein. 31 5.1
AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibilit... 31 5.1
AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibilit... 31 5.1
AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibilit... 31 5.1
AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibilit... 31 5.1
AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open readi... 31 5.1
AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein pr... 31 5.1
AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein pr... 31 5.1
AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein. 31 5.1
L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen ... 27 6.1
L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein. 27 6.1
AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha ... 27 6.1
AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha ... 27 6.1
>X57010-1|CAA40330.1| 243|Homo sapiens collagen II alpha 1 chain
protein.
Length = 243
Score = 31.9 bits (69), Expect = 3.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGG 610
PGNPGP PP PP GG
Sbjct: 60 PGNPGPPGPPGPPGPPGLGG 79
>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
Length = 1160
Score = 31.9 bits (69), Expect = 3.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGG 610
PGNPGP PP PP GG
Sbjct: 89 PGNPGPPGPPGPPGPPGLGG 108
>M25730-1|AAA58428.2| 167|Homo sapiens alpha-1 type II collagen
protein.
Length = 167
Score = 31.9 bits (69), Expect = 3.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGG 610
PGNPGP PP PP GG
Sbjct: 89 PGNPGPPGPPGPPGPPGLGG 108
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 3.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGG 610
PGNPGP PP PP GG
Sbjct: 158 PGNPGPPGPPGPPGPPGLGG 177
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 31.9 bits (69), Expect = 3.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGG 610
PGNPGP PP PP GG
Sbjct: 158 PGNPGPPGPPGPPGPPGLGG 177
>BA000025-63|BAB63315.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AL773544-4|CAI18481.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AL662867-4|CAI17721.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AL662844-4|CAI18325.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AF484420-1|AAO49377.1| 136|Homo sapiens psoriasis susceptibility 1
candidate 2 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AB202103-4|BAE78627.1| 136|Homo sapiens chromosome 6 open reading
frame 17 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AB103620-3|BAF31284.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AB088114-3|BAC54949.1| 136|Homo sapiens hypothetical protein
protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>AB031480-1|BAA88131.1| 136|Homo sapiens SPR1 protein.
Length = 136
Score = 31.5 bits (68), Expect = 5.1
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = -2
Query: 542 PPXXRPPXPXR----WPAXPXPGKGPXXPRP 462
PP PP P R WPA P P + P P P
Sbjct: 86 PPRTDPPQPPRPDDPWPAGPQPPENPWPPAP 116
>L25286-1|AAA58429.1| 1388|Homo sapiens alpha-1 type XV collagen
protein.
Length = 1388
Score = 27.1 bits (57), Expect(2) = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGGXLSLXGXXTRP 643
PG PGP PP PP G ++L G P
Sbjct: 1095 PGPPGPPGPPGPPAIL--GAAVALPGPPGPP 1123
Score = 22.6 bits (46), Expect(2) = 6.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 494 KGKRATXXGEXXXXXGXXXPGNPGP 568
KG++ G PGNPGP
Sbjct: 1039 KGEKGDINGSFLMSGPPGLPGNPGP 1063
>L25280-1|AAC78500.1| 1388|Homo sapiens type XV collagen protein.
Length = 1388
Score = 27.1 bits (57), Expect(2) = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGGXLSLXGXXTRP 643
PG PGP PP PP G ++L G P
Sbjct: 1095 PGPPGPPGPPGPPAIL--GAAVALPGPPGPP 1123
Score = 22.6 bits (46), Expect(2) = 6.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 494 KGKRATXXGEXXXXXGXXXPGNPGP 568
KG++ G PGNPGP
Sbjct: 1039 KGEKGDINGSFLMSGPPGLPGNPGP 1063
>AL354923-1|CAI12548.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 27.1 bits (57), Expect(2) = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGGXLSLXGXXTRP 643
PG PGP PP PP G ++L G P
Sbjct: 1095 PGPPGPPGPPGPPAIL--GAAVALPGPPGPP 1123
Score = 22.6 bits (46), Expect(2) = 6.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 494 KGKRATXXGEXXXXXGXXXPGNPGP 568
KG++ G PGNPGP
Sbjct: 1039 KGEKGDINGSFLMSGPPGLPGNPGP 1063
>AL136084-3|CAI17044.2| 1388|Homo sapiens collagen type XV alpha 1
protein.
Length = 1388
Score = 27.1 bits (57), Expect(2) = 6.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 551 PGNPGPXXPPXPPXXXSGGGXLSLXGXXTRP 643
PG PGP PP PP G ++L G P
Sbjct: 1095 PGPPGPPGPPGPPAIL--GAAVALPGPPGPP 1123
Score = 22.6 bits (46), Expect(2) = 6.1
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +2
Query: 494 KGKRATXXGEXXXXXGXXXPGNPGP 568
KG++ G PGNPGP
Sbjct: 1039 KGEKGDINGSFLMSGPPGLPGNPGP 1063
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,945,393
Number of Sequences: 237096
Number of extensions: 1143175
Number of successful extensions: 10398
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9588
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 13765548174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -