Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L24
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    35   0.014
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    28   1.6  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   3.7  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    26   6.5  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         26   8.5  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   8.5  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 798 LNSXNET*VCKCFCLFDFSVHCKFLMLQCAKYYSSD 691
           LN  +   VCK +C FDFSV C      C KYY  D
Sbjct: 256 LNEPSNCKVCKKWCAFDFSVQC----ADCKKYYHMD 287


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 761 FVYSTSVFIASFLCYNVQNIIPAIHFHLLFVNSTFCTRSRCIVVLGGTFADMRK-NNL 591
           +VY+   F+    C+ +    P      L + S F   +  I+ LGG F++  K NNL
Sbjct: 345 WVYACIFFLTRVFCFLIDTPYPQFEKIPLEIYSIFAAINVYIIELGGKFSNRAKFNNL 402


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 552 NM*KKKYHPRLVKKHHIYHF 493
           N+  KK H  L++KHHI +F
Sbjct: 348 NLQNKKLHTVLIQKHHIVYF 367


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 542 KKNTIHASLKNTIFIISFFVCLQT 471
           K+N IH   K  IFI++ F+ L T
Sbjct: 5   KRNIIHFLRKRAIFIVAAFIALLT 28


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 424 HYTSIIIAASNTNDLLVCKQT--KKEMINMVFFNEAWMV----FFFLHIYKCTF 567
           H T +++      + +   +T  K    N+ FF   W++    FF +H+Y C F
Sbjct: 46  HETPLLLMQVVEREAITLAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLYSCNF 99


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 238 NKIKNRYTWLLEFFKVKVLLNSNHVTRISFNP 143
           N I+    WLL +  V V+ N N+  +   NP
Sbjct: 255 NTIQTSCPWLLRYLTVAVVTNQNNANQKPRNP 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,864
Number of Sequences: 5004
Number of extensions: 70806
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)