Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L24
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   8.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   8.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   8.9  

>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = -3

Query: 711 AKYYSSDTFSFIIR*FDFLYTFTMHC----CFRRNIRRYEKKQLTKRRI*NNKSTFI--N 550
           +K Y++ + S   R   F +T + +     C R   R Y KK     ++ N K  F+   
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEER 266

Query: 549 M*KKKYHPRLVKKHHIY 499
             +K+Y     ++  +Y
Sbjct: 267 TSRKRYSRSREREQKLY 283


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = -3

Query: 711 AKYYSSDTFSFIIR*FDFLYTFTMHC----CFRRNIRRYEKKQLTKRRI*NNKSTFI--N 550
           +K Y++ + S   R   F +T + +     C R   R Y KK     ++ N K  F+   
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEER 266

Query: 549 M*KKKYHPRLVKKHHIY 499
             +K+Y     ++  +Y
Sbjct: 267 TSRKRYSRSREREQKLY 283


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 245 HTHIAHLNQIKVIKSTKTETVRFL 316
           H HI ++   K+IKST  +  R++
Sbjct: 56  HNHIQNI--FKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 245 HTHIAHLNQIKVIKSTKTETVRFL 316
           H HI ++   K+IKST  +  R++
Sbjct: 39  HNHIQNI--FKIIKSTNEKITRYI 60


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -3

Query: 711 AKYYSSDTFSFIIR*FDFLYTFTMHC----CFRRNIRRYEKKQLTKRRI*NNKSTFI 553
           +K Y++ + S   R   F +T + +     C R   R Y KK     ++ N K  F+
Sbjct: 207 SKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFL 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,675
Number of Sequences: 438
Number of extensions: 4846
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)