Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L20
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    46   4e-05
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    46   4e-05
Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 283 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 414
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 283 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 414
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical
           protein F39B2.5 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 378 PCTGINIRPLTSYMLRFSCNVIQNPPPAQSTKPL 277
           P T   + P   Y+ RF+    Q  PP   T PL
Sbjct: 125 PLTKRELLPSLQYLCRFTLKTSQQKPPTPKTAPL 158


>Z50070-2|CAB54253.1| 1069|Caenorhabditis elegans Hypothetical
           protein F43G6.1b protein.
          Length = 1069

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 12  LPSHYRELLKILMIFGKVFYLYKIYRGSQQITRNNVDK 125
           L S YR   +I ++  K+FY  ++  G++ ++R+++D+
Sbjct: 852 LTSQYRMNREISVLSSKLFYENRLICGNESVSRSSLDR 889


>Z50070-1|CAA90399.1| 1105|Caenorhabditis elegans Hypothetical protein
            F43G6.1a protein.
          Length = 1105

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 12   LPSHYRELLKILMIFGKVFYLYKIYRGSQQITRNNVDK 125
            L S YR   +I ++  K+FY  ++  G++ ++R+++D+
Sbjct: 888  LTSQYRMNREISVLSSKLFYENRLICGNESVSRSSLDR 925


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,303,192
Number of Sequences: 27780
Number of extensions: 338983
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)