Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L17
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    27   2.7  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   4.7  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   4.7  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   6.2  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    26   8.2  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   8.2  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 77  FKMYSKVLLSAALLXMRERSSFYASWLRREVSDHQ 181
           +K Y   LL  ALL +R+  S+  SW R   + H+
Sbjct: 86  YKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHR 120


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = -2

Query: 378 YSGAVSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDLPSPHFLVPSDKVVNIXEGVR 199
           Y   ++L+G  A ++   +  V    ++  V    +  DLP    L P  +++    G+ 
Sbjct: 390 YGYIINLAGVSAFIVWTAIIFVHFRFRRGWVKQGYALSDLPFKSPLYPFPQLIGFVIGII 449

Query: 198 LTLKIGW 178
           LTL  GW
Sbjct: 450 LTLVQGW 456


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 826 NYFYSYLKMLDECW*LKRNYRTQINSYKSIDFYNNF--FRQK 707
           N+F  +LK+ DEC     N+   I  +   DF   F  F QK
Sbjct: 255 NFFRDFLKVCDEC-----NFNHNIKEFSKCDFTQMFHHFEQK 291


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 680 RQECLSKRHLYSCFDNG 630
           R  C +K HL +C DNG
Sbjct: 83  RDMCFTKNHLLACHDNG 99


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +1

Query: 256 GKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYG 411
           GK  G   + D  +          F   RG     +Y TRV G GG  T YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 6/37 (16%)
 Frame = +2

Query: 101 LSAALLXMRERSSFYAS------WLRREVSDHQPIFK 193
           L + +L +R RS+ + +      W+ R+++D+QPIF+
Sbjct: 158 LDSCMLSVRARSTRWQNIEGSLLWVNRKLADYQPIFQ 194


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 366 VSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDL-PSPHFLVPSDKVVN 217
           + L+     +++EE P +   ++ S VAL Q+P  L P+   +V  ++VV+
Sbjct: 151 IELTSDVKRIVLEEYPYLKIPSEDSNVALPQAPVLLWPAEFGMVIEEEVVD 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,204
Number of Sequences: 5004
Number of extensions: 63580
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)