Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L13
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    31   0.23 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.92 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.2  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   3.7  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   4.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   8.6  

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +1

Query: 505 KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNXVDSFRAXVV 684
           K SP+V+WK   +W + K   K +++      +LG G++  G+     V   + F+A V 
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS-TGNISLLSVKHPE-FQAVVT 84

Query: 685 PG 690
           PG
Sbjct: 85  PG 86


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 520 VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 630
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 423 VHKLNRVFGEDKSELNWETIPDDVL 349
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 QLYNSVVVADYDSAVEKSKHLYEEKKS 257
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/66 (36%), Positives = 31/66 (46%)
 Frame = +2

Query: 326 STLAPGXPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATART 505
           ST+AP    TSSG  +      SS  T LS  T A  S    +  F  T + LPT++A T
Sbjct: 612 STVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFT-SSGFNTT-SGLPTSSAST 669

Query: 506 RQARES 523
             +  S
Sbjct: 670 PSSNSS 675


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 368 VSQLSSDLSSPKTRLSLCTSATV 436
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 249 KKSEVITNVVNKLIRNNFMNCMEYAYQLWLQGL 347
           K+   +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 347 PRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 439
           P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 434 PSR-LYISLIAFSAKISLNSTGKQSRTMSLEXLEPKLIGVLHAVHK--VVSYQFVHD 273
           PSR LY+  IAFS       TG + R + L  L  + +  + + H+  + S  F H+
Sbjct: 357 PSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHN 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,942
Number of Sequences: 5004
Number of extensions: 57594
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)