Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L12
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   1.2  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   2.8  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    27   4.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +3

Query: 189 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLXKADLTSSLPLSL 338
           A+ L +++ T+ + P  +T  ET ++ S+    T T+  +  TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 236 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 340
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 161 VVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 328
           ++EN +  +  +     P   + PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 23  MLENEEEASHSQLFTPCPVPPSFPKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/59 (22%), Positives = 25/59 (42%)
 Frame = +2

Query: 155 VKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 331
           V+++++  S +  + +  +P   N  +  N N    +P D       PP      +PTP
Sbjct: 126 VRIIDHRQSPSADQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTP 184


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 376 NFLRYSLLPTASTRERGRLEVRSALXRVHVICTVVDRFV 260
           NF    ++P  STR+R  + +R     +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 262  RTYRQRCILRGPSXRPTLLQAYPFPWCSRWEVKNIL 369
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,571
Number of Sequences: 5004
Number of extensions: 47176
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)