Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L07
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    55   2e-08
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    28   2.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   3.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   3.5  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   4.6  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   8.1  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
 Frame = +3

Query: 276 FRGIRYAEAPVGDLRFQAPKPI---LQYSGEVDASKEGPACPQPTNPNYYNNV------- 425
           F GIRYA+ PVG LR++ P  +     YSG+ +  K    CPQP   N  N V       
Sbjct: 21  FTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFK--TICPQPFYNNRKNQVRNPDFKY 78

Query: 426 DEDCLRLNVYTHGSS--GELRPVVIFIHAGGFYAASGRSDIAGPDYFLDKD-----IVLV 584
           DEDCL LN++        E  PV+ FIH G     +           L  D      +LV
Sbjct: 79  DEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILV 138

Query: 585 TINYRLSSLGFL 620
           +  +RL+  GFL
Sbjct: 139 SPGHRLNLFGFL 150



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
 Frame = +1

Query: 607 LLGFLSTGDELAP-----GNNGYKDQVMALRWVQRNIASFGGDPNLVTIAGYSAGSFSVM 771
           L GFL+ G EL        N G+ DQ + L W  ++I SFGG+   + + G SAGS+S +
Sbjct: 146 LFGFLA-GKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSYSAL 204

Query: 772 L----HTVSPMSKGLFHRAISMS 828
                 T  P +  +  RA+ +S
Sbjct: 205 FQLIYETYHPEANQIIKRALLLS 227


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 PRGSWPPPSRSERRTPARPSFAKSNVSIRSISRFLDADPS 256
           PR    P SRS+R  P+RP+ A  N  + SIS  +  D S
Sbjct: 77  PRNKSRPASRSDRFIPSRPNTA--NAFVNSISSDVPFDYS 114


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 336 PILQYSGEVDASKEGPACPQPTNPNYYNNVDE 431
           P+++ S   DA+   P  P+P N +  +N+DE
Sbjct: 109 PVIETSKVKDANHFPPNYPEPKNDSVSSNIDE 140


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 655  GYKDQVMALRWVQRNIASFGGDPNLVTIAGYS 750
            GYKD VM L    +N   F G  N +  AG S
Sbjct: 1103 GYKDGVMRLLETDQNSLLFAGVVNFLIFAGIS 1134


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 376 SLLASTSPEYWSIGFGAWNLRSPTGA-SAYLIPRKPWKCLPRRVCIQEPRNTPDADVTFG 200
           +L A      WS+G  +W + SP GA S++ +  +  K +P  +    P+ + +A+VT G
Sbjct: 300 TLTARWKTGVWSLG--SWGIASPRGANSSFSLTWQQMKAIPNSLV---PQLSWNAEVTAG 354


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 657 IQRPSDGLALGTEEHRVIRRR 719
           +Q   +GL L TE HR +RRR
Sbjct: 628 LQNQENGLLLITESHRKLRRR 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,658,236
Number of Sequences: 5004
Number of extensions: 79324
Number of successful extensions: 219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)