Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L06
         (1669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   2.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   7.6  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 267 PXAAXPLXPXXPXPPCPXXXXPAPSVSPXXXRXXPXPYXTVXPRXXPXVA 118
           P  + P  P  P PP P    P PS +P      P P     P   P  A
Sbjct: 139 PPTSAPPRPSIP-PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/66 (30%), Positives = 20/66 (30%)
 Frame = -3

Query: 296  AXXPXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSP 117
            A  P   P S  PP      G  P       P  P P     P P  T   AP     S 
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT-AKAPPVPAPSS 1244

Query: 116  XPPSAS 99
              PS S
Sbjct: 1245 EAPSVS 1250



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/63 (28%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
 Frame = -3

Query: 287  PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXP- 111
            P     +P  P  S    P P   A   P+ P       P P    P  P      P P 
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPT 1221

Query: 110  PSA 102
            PSA
Sbjct: 1222 PSA 1224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/69 (26%), Positives = 20/69 (28%)
 Frame = -3

Query: 275 PXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASX 96
           P  P PP    R G  P          P PP     +   + P  P      P PP  S 
Sbjct: 311 PPPPPPPSRRNR-GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369

Query: 95  YXWXXGXPP 69
                  PP
Sbjct: 370 PSTGRQPPP 378



 Score = 27.1 bits (57), Expect = 7.6
 Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
 Frame = -3

Query: 266 PXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXS--PXPPSASXY 93
           P PP  S   G  P          P PP  S PS     P        S  P PP A   
Sbjct: 339 PPPPPRSNAAGSIPLPPQGR-SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPG 397

Query: 92  XWXXGXPPTXN 60
                 PP  N
Sbjct: 398 RSAPALPPLGN 408


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/54 (27%), Positives = 18/54 (33%)
 Frame = -3

Query: 269 SPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPP 108
           SP PP  +      P      +P+ P  P    P P    P   G     P PP
Sbjct: 731 SPPPPPPAVIV---PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,327,741
Number of Sequences: 5004
Number of extensions: 9682
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 949461346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)