Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_L06
(1669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 31 1.8
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.8
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 9.7
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 260 PPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSAS 99
PP + P P A V + PP S P+P P P P PSAS
Sbjct: 325 PPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPP--PPPPPQTPSAS 376
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/71 (30%), Positives = 23/71 (32%)
Frame = -3
Query: 266 PXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXW 87
P PP P P + P P PP P P P PG P PPS
Sbjct: 276 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP----PGMPG--MPPPPPPSRFGPPG 329
Query: 86 XXGXPPTXNXG 54
G PP G
Sbjct: 330 MGGMPPPPPPG 340
Score = 31.1 bits (67), Expect = 2.4
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = -3
Query: 266 PXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXW 87
P PP S P P P P P P P PG P PP Y
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF-GPPGMGGMPPPPPPGMRYPG 345
Query: 86 XXGXPP 69
PP
Sbjct: 346 GMPPPP 351
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 203 PLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXWXXGXPPTXNXG 54
P P PP P P P PG P PPS+ + PP G
Sbjct: 261 PPVPPPPPSVTPMPPPMPP-TPGMTPRPPPPPSSGMWPPPPPPPPGRTPG 309
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 1.8
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 267 PXAAXPLXPXXPXPPCPXXXXPAPSVSPXXXRXXPXPYXTVXPRXXP 127
P A P P P P CP P P + P P P P P
Sbjct: 36 PMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 30.3 bits (65), Expect = 4.2
Identities = 14/42 (33%), Positives = 15/42 (35%)
Frame = -2
Query: 309 CXXXRXXPXRXXXLPXAAXPLXPXXPXPPCPXXXXPAPSVSP 184
C P + P P P P P CP P PS SP
Sbjct: 45 CPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 1.8
Identities = 22/71 (30%), Positives = 23/71 (32%)
Frame = -3
Query: 266 PXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXW 87
P PP P P + P P PP P P P PG P PPS
Sbjct: 286 PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGP----PGMPG--MPPPPPPSRFGPPG 339
Query: 86 XXGXPPTXNXG 54
G PP G
Sbjct: 340 MGGMPPPPPPG 350
Score = 31.1 bits (67), Expect = 2.4
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = -3
Query: 266 PXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXW 87
P PP S P P P P P P P PG P PP Y
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF-GPPGMGGMPPPPPPGMRYPG 355
Query: 86 XXGXPP 69
PP
Sbjct: 356 GMPPPP 361
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -3
Query: 203 PLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASXYXWXXGXPPTXNXG 54
P P PP P P P PG P PPS+ + PP G
Sbjct: 271 PPVPPPPPSVTPMPPPMPP-TPGMTPRPPPPPSSGMWPPPPPPPPGRTPG 319
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPX--PPXXSXPSPXXTXPXAPGXXXXSPX 114
P P PP + P P A + P P PP S P P P SP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA-GTGSPP 330
Query: 113 PPSASXYXWXXGXPPTXNXG*GXXP 39
PP PPT + G P
Sbjct: 331 PPPRQKRQAPERSPPTGSPPTGSPP 355
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPP 108
P P P PP S P PP P P T P SP PP
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 107 SA 102
A
Sbjct: 293 RA 294
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -3
Query: 275 PXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASX 96
P + PP G P A + P P P S P P P P P P S
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 289
Query: 95 YXWXXGXPP 69
G PP
Sbjct: 290 PPPRAGSPP 298
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPX--PPXXSXPSPXXTXPXAPGXXXXSPX 114
P P PP + P P A + P P PP S P P P SP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA-GTGSPP 351
Query: 113 PPSASXYXWXXGXPPTXNXG*GXXP 39
PP PPT + G P
Sbjct: 352 PPPRQKRQAPERSPPTGSPPTGSPP 376
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPP 108
P P P PP S P PP P P T P SP PP
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 107 SA 102
A
Sbjct: 314 RA 315
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -3
Query: 275 PXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASX 96
P + PP G P A + P P P S P P P P P P S
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 310
Query: 95 YXWXXGXPP 69
G PP
Sbjct: 311 PPPRAGSPP 319
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.8
Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPX--PPXXSXPSPXXTXPXAPGXXXXSPX 114
P P PP + P P A + P P PP S P P P SP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA-GTGSPP 336
Query: 113 PPSASXYXWXXGXPPTXNXG*GXXP 39
PP PPT + G P
Sbjct: 337 PPPRQKRQAPERSPPTGSPPTGSPP 361
Score = 31.1 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 18/62 (29%)
Frame = -3
Query: 287 PXAXPXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPP 108
P P P PP S P PP P P T P SP PP
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 107 SA 102
A
Sbjct: 299 RA 300
Score = 29.9 bits (64), Expect = 5.5
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -3
Query: 275 PXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASX 96
P + PP G P A + P P P S P P P P P P S
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPP--PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSP 295
Query: 95 YXWXXGXPP 69
G PP
Sbjct: 296 PPPRAGSPP 304
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.1 bits (62), Expect = 9.7
Identities = 19/72 (26%), Positives = 24/72 (33%)
Frame = -3
Query: 275 PXSPXPPXHSXRXGPXPXAXAXXVPLXPXPPXXSXPSPXXTXPXAPGXXXXSPXPPSASX 96
P P S P P + V P P + PSP P P SP P+ +
Sbjct: 977 PGPSGPNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPN- 1035
Query: 95 YXWXXGXPPTXN 60
W P+ N
Sbjct: 1036 --WPSPNGPSPN 1045
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.133 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,358,663
Number of Sequences: 27780
Number of extensions: 86923
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4878082060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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