Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L02
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    32   0.091
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    30   0.37 
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.84 
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    29   1.1  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    28   2.0  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   2.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.4  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   4.5  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   4.5  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    26   6.0  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   6.0  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    26   7.9  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   7.9  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = +3

Query: 390 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKY 569
           ++ + +DGI++      +F++   F+  + +L +  G D     T  N     T  G   
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437

Query: 570 VLDDNLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETMEKIDFN 695
              D  K VK +M  N+N V+ +     E   +   M K+D N
Sbjct: 438 GPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMN 480


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 519 VTNDNKAYKVTENG--NKYVLDDNLKAVKQVMFDNFNVLHYVTLDNEVFKV-KETMEKID 689
           V N N  +K+T+    N   +D+    + +  +DN     +V LD+E+  + KE  EK +
Sbjct: 466 VFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNEKYN 525

Query: 690 F 692
           F
Sbjct: 526 F 526


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 444  FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK--YVLDDNLKAVKQVMFDN 617
            F  Y  F  D + +   N   +F+ +    ++Y V E+GN   YVL D  + + QV   N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059

Query: 618  F 620
            F
Sbjct: 1060 F 1060


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -3

Query: 671 LFHFKYFIIQSDI----VQYIEVIKHNL--FDGFQIIIQNVFVTIFSDFVSFIVVCYG 516
           LFHF  F I S +      Y + I H+   F   + I +  FVT+  DFV    + +G
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFG 474


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 IYTIHADINDNRIEKGVYEVDLNLN 332
           +YT+ A IND  + K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 525 NDNKAYKVTENGNKYVLDDNLKAVKQVMF-DNFNVLHYVTLDNEVFKVKETMEKIDFNVK 701
           N  ++YK  E   +++ DDN+   K+V + +  N     TL++   +  + + KI  NVK
Sbjct: 89  NIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLNSLNSEFLQLLRKIAINVK 148


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
 Frame = +3

Query: 42   DFDVLLHVLAKGNWMSKMNAATLLIFVVGLSVTASKVLNGSVFRQRSVELYSTEDQVVGA 221
            DF   LH + KG+W  ++ A  LLI +  L    S  L    F + ++   S    +  A
Sbjct: 1074 DFTRQLHYIPKGSWTVQIVAIVLLILLPPLFGIFSVALYSGAFSRVTIFNGSHNRGIKVA 1133

Query: 222  FVISNAEKSDGKIYTIHADI-NDNRIEKGVYEVDLNLNTTVKILD 353
                 +  S    +++H  + N + + K + E +  LN  V  L+
Sbjct: 1134 KQKIKSIMSRIFPFSVHLPLDNSSELLKQLPESEKRLNVLVATLE 1178


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 426 YIHISRHC*LRISCCHHHNINPFLC 352
           +IH S HC      C +H INP +C
Sbjct: 18  HIHFSHHC------CENHFINPLVC 36


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +3

Query: 447 KKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYV----LDDNLKAVKQVMFD 614
           K+  TF+  +I  T  + S  +        +++V+EN N++     +D N  A   V++ 
Sbjct: 2   KRRATFQCPLIESTIKHQSTNYTKTETATTSHEVSENANEHKGKSNIDINKIAYYNVVWR 61

Query: 615 NFNVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRL 719
              +  + T + + F V+E      +N   D+ RL
Sbjct: 62  KITMKKHKTWEGDGFLVREDSNLTLYN--SDFTRL 94


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 6/134 (4%)
 Frame = +3

Query: 180 SVELYSTEDQVVGAFVISNAEKSDGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDK- 356
           S E++    +VV      NAE +          I +N I KGVY+         KI+ + 
Sbjct: 61  SKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARI 120

Query: 357 -----GRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAV 521
                 R    DD+    ++SND     +  D + K   + K   +  +      +    
Sbjct: 121 PRAFAERKDSLDDEDDNMISSNDPTKSPEEHDTTTKSIASLKDAELDSSL---ETVLIRY 177

Query: 522 TNDNKAYKVTENGN 563
           + D+K Y +  N N
Sbjct: 178 SKDDKDYSIQINPN 191


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 322 KSTSYTPFSIRLSLISACIVYILPSLFSALDITKAPT 212
           ++T     S +LS  S  I  + PSL S   +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/73 (20%), Positives = 34/73 (46%)
 Frame = +3

Query: 477 ISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDNLKAVKQVMFDNFNVLHYVTLDNEV 656
           I  + ++ SD       ++         +KY +D+ +K + +V  D++ +L   +  NE+
Sbjct: 54  IDWSNLSHSDFVQCGVYEDSTNTWLAGASKYKIDE-IKTLPKVPRDHYIILCDSSESNEI 112

Query: 657 FKVKETMEKIDFN 695
            K  + +   DF+
Sbjct: 113 AKFTQVVHSFDFS 125


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 701 FNIKIDFFHSLFHFKYFIIQSDIVQYIEVIKHNLFDGFQII-IQNVFV 561
           FN  +DF   +F  +  +++      +EV+K+ L + + ++ + N++V
Sbjct: 472 FNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMNIYDLLELPNLYV 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,493
Number of Sequences: 5004
Number of extensions: 62000
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)