Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_L01
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 28 1.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 2.0
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 27 2.7
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 27 4.7
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 27 4.7
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 26 6.1
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce... 26 6.1
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 26 8.1
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 8.1
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 477 IYKREHGSSVEKELYKDMTIPELIDRLLLKRAVSFMGAR--DAYMLMSG--KKGVDGWEN 644
I+ +E VEK+ + +P +LKRA+S +G R + Y +SG K G
Sbjct: 25 IFLKEDTEDVEKKSLYLINVPITTTEKILKRAISQLGGRIVNIYPNISGLLKSGTHLRVK 84
Query: 645 VGTPAETEPLV 677
+ PAE + ++
Sbjct: 85 LVEPAEVKQVI 95
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Frame = -3
Query: 730 TNKKAESFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPINDTALFSNN- 554
T+ + S +SS L + + S S+ P+ S S+P +++ +S P + ++ FS++
Sbjct: 499 TSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSS-SSSIPTSSSSDFSSSI 557
Query: 553 RSISSGM----VISLYNSFSTLLPCS 488
+ISSG+ + S ++S S++L S
Sbjct: 558 TTISSGISSSSIPSTFSSVSSILSSS 583
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 281 YFSAFLNKFIGLLGHARKTPVKFYPRKIF 195
YF+ + +G+LGH KT + F+ +IF
Sbjct: 290 YFAGMVMAVVGILGHFSKTLMLFFIPQIF 318
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 4.7
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -3
Query: 748 TPVXPLTNKK-AESFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPINDT 572
+P P T+ SF S L +S T P S PST + N S APIN
Sbjct: 179 SPTSPTTSAAFPSSFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVS--NASTSSAPINPR 236
Query: 571 ALFSNNRSISSGMVISLYNSFS 506
A + SISS I +S S
Sbjct: 237 APQTRRESISSTSSIHYCSSSS 258
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 98 YFK*TFPVYLFNKRESQTNQLKGSL 24
Y+ F +Y+ K E++TNQ+K L
Sbjct: 298 YYGGNFDIYMRTKEENETNQMKAYL 322
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -3
Query: 610 INIYASRAPINDTALFSNNRSISSGMVISLYNSFSTLLPCSRLYIKKCAISNKTLSCIIG 431
I YA A + T+ +S + IS+ +I Y + +L L KC C+ G
Sbjct: 107 ITEYARYATGHGTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYG 166
Query: 430 YVSEIFL 410
Y + ++L
Sbjct: 167 YANIVWL 173
>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 189
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 369 LEKLKEHRPIDRLKRNISETYPIIHERVLLLMAHFLIYKREHGSSVEKELYKDMTIPELI 548
L K++ H +R +R + E ERV F + + E ++ + YK M + +
Sbjct: 99 LSKMERHLEEERAERVMHEFRAQEKERVKEGKKPFYLKRNEQKKLIQMDKYKSMEGTKAL 158
Query: 549 DRLLLKR 569
D+ + K+
Sbjct: 159 DKYIEKK 165
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 393 PIDRLKRNISE-TYPIIHERVLLLMAHFLIYKREHG 497
P+D +RN SE + ER+ + +AH +++ R+ G
Sbjct: 96 PVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAG 131
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = -3
Query: 724 KKAESFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPI 581
++ + ++S L+ + + +G A + PST F P N A+ +P+
Sbjct: 389 RRVAALLASRLNLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPL 436
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,172
Number of Sequences: 5004
Number of extensions: 67953
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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