Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L01
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical ...    29   4.4  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    29   5.8  
AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin prot...    29   5.8  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    29   5.8  

>AF100669-2|AAK39264.1|  546|Caenorhabditis elegans Hypothetical
           protein R11E3.2 protein.
          Length = 546

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 712 SFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPIN---DTALFSNNRSIS 542
           SF+++ ++T   T+  +   +     PS  +LP++N + S  P N   DT+L+ +   + 
Sbjct: 65  SFVTAGIATILQTTFGMRLAI--LHGPSFAYLPVLNTFQSTYPCNEHTDTSLWQHKMQMI 122

Query: 541 SG 536
           SG
Sbjct: 123 SG 124


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 556 NRSISSGMVISLYNSFSTLLPCSRLYIKKCAISN 455
           +R+ S    +S+Y+  S L+ CS LY  +C + N
Sbjct: 102 SRTNSHTKALSVYDKSSKLIECSNLYQGRCRLRN 135


>AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin protein
           5, isoform a protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +3

Query: 495 GSSVEKELYKDMTIPELIDRLLLKRAVSFMGARDAYMLMSGKKGVDGWENVGTPAET 665
           G  VE+   KD+ +P  + R +  +A +   AR A +   G+K  D  E++ T A+T
Sbjct: 266 GVKVERVEIKDIRLPHQLMRSMAAKAEAVRRARAAIIAAQGEK--DASESLQTAADT 320


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 556 NRSISSGMVISLYNSFSTLLPCSRLYIKKCAISN 455
           +R+ S    +S+Y+  S L+ CS LY  +C + N
Sbjct: 108 SRTNSHTKALSVYDKSSKLIECSNLYQGRCRLRN 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,863,389
Number of Sequences: 27780
Number of extensions: 362670
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)