Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_L01
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   8.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 550 SISSGMVISLYNSFSTLLPCSRLYIKKCAISN 455
           ++ +GMV+ ++ S  +L   S L++   AISN
Sbjct: 67  AMGNGMVVYIFLSTKSLRTPSNLFVINLAISN 98


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 572 RIVYGSSRCVYVNERQERRRWLGERGHPSGNRAAGVERRAQL 697
           R++ G  + V  N  + +R W   R        AG+ R+  L
Sbjct: 27  RLITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAGIHRKKVL 68


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 572 RIVYGSSRCVYVNERQERRRWLGERGHPSGNRAAGVERRAQL 697
           R++ G  + V  N  + +R W   R        AG+ R+  L
Sbjct: 148 RLITGDEKWVVYNNIKRKRSWSRPREPAQTTSKAGIHRKKVL 189


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 183 AKLLEDLPWIKLDWCFPSMTQETNELIQ 266
           A LLE   W  LD+ +P    +T  +++
Sbjct: 32  APLLERFFWRTLDYAYPDEASKTMAMMK 59


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 547 ISSGMVISLYNSFSTLLPCSRLYIKKCAISN 455
           + +GMV+ ++ S  +L   S L++   AIS+
Sbjct: 34  MGNGMVVYIFLSTKSLRTPSNLFVINLAISD 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,803
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)