Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_K22
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   115   1e-26
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   113   4e-26
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.37 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   6.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   7.9  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  115 bits (276), Expect = 1e-26
 Identities = 59/123 (47%), Positives = 70/123 (56%)
 Frame = +1

Query: 109 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 288
           SKVS   +   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 289 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 468
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 469 FVG 477
            +G
Sbjct: 122 LLG 124



 Score =  101 bits (242), Expect = 1e-22
 Identities = 47/72 (65%), Positives = 57/72 (79%)
 Frame = +2

Query: 458 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 637
           + P LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHVDM  ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177

Query: 638 LAQNVHLSINFL 673
           LA N+ L+INFL
Sbjct: 178 LAANLSLAINFL 189



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 672 LVSLLKKHWQNVRSLHMKSTMGPP 743
           LVSLLKK WQN+ SL +KSTMG P
Sbjct: 189 LVSLLKKGWQNIGSLVIKSTMGKP 212


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  113 bits (271), Expect = 4e-26
 Identities = 59/123 (47%), Positives = 71/123 (57%)
 Frame = +1

Query: 109 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 288
           SKVS  ++   V  +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP 
Sbjct: 2   SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61

Query: 289 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 468
           M +C+LGD    D AK   V  M                           SE LIKQIPR
Sbjct: 62  MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121

Query: 469 FVG 477
            +G
Sbjct: 122 LLG 124



 Score = 98.7 bits (235), Expect = 9e-22
 Identities = 44/72 (61%), Positives = 57/72 (79%)
 Frame = +2

Query: 458 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 637
           + P LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177

Query: 638 LAQNVHLSINFL 673
           L  N+ L++NFL
Sbjct: 178 LIANIMLAVNFL 189



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +3

Query: 672 LVSLLKKHWQNVRSLHMKSTMGPPQXI 752
           LVSLLKK WQN+ SL +KSTMG P  +
Sbjct: 189 LVSLLKKGWQNIGSLVVKSTMGKPHRL 215


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 91   LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 255
            +T+K++  V ++  Y    C N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 920  VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 636 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 538
           S+G   ++ T T R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 527 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 673
           E + +++    G   F         +  GHV  T  ELA+NV   + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -3

Query: 331 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 152
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL  P    S      +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373

Query: 151 RHSRTRRACH 122
            HS+++ + H
Sbjct: 374 SHSQSQNSLH 383


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 649  ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 485
            +L K++    + ++C+++ +HL+H+ L      F N  L+   L+      F  FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,893
Number of Sequences: 5004
Number of extensions: 66370
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)