Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_K22
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   130   2e-30
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   108   6e-24
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   108   6e-24
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    28   7.5  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm rec...    28   9.9  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  130 bits (313), Expect = 2e-30
 Identities = 64/123 (52%), Positives = 78/123 (63%)
 Frame = +1

Query: 109 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 288
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 289 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 468
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 469 FVG 477
            +G
Sbjct: 122 ILG 124



 Score =  108 bits (259), Expect = 6e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 458 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 637
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 638 LAQNVHLSINFL 673
           L  N+ LSINFL
Sbjct: 178 LVSNISLSINFL 189



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +3

Query: 672 LVSLLKKHWQNVRSLHMKSTMGPPQXI 752
           LVSLLKK+WQNVRSL++KSTMG PQ +
Sbjct: 189 LVSLLKKNWQNVRSLNIKSTMGKPQRV 215


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  108 bits (259), Expect = 6e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 458 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 637
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 638 LAQNVHLSINFL 673
           L  N+ LSINFL
Sbjct: 148 LVSNISLSINFL 159



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +1

Query: 217 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 396
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 397 XXXXXXXXXXXXXXSESLIKQIPRFVG 477
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +3

Query: 672 LVSLLKKHWQNVRSLHMKSTMGPPQXI 752
           LVSLLKK+WQNVRSL++KSTMG PQ +
Sbjct: 159 LVSLLKKNWQNVRSLNIKSTMGKPQRV 185


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  108 bits (259), Expect = 6e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 458 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 637
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 638 LAQNVHLSINFL 673
           L  N+ LSINFL
Sbjct: 117 LVSNISLSINFL 128



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 21/27 (77%), Positives = 25/27 (92%)
 Frame = +3

Query: 672 LVSLLKKHWQNVRSLHMKSTMGPPQXI 752
           LVSLLKK+WQNVRSL++KSTMG PQ +
Sbjct: 128 LVSLLKKNWQNVRSLNIKSTMGKPQRV 154



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +1

Query: 289 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 468
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 469 FVG 477
            +G
Sbjct: 61  ILG 63


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 166 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 276
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -3

Query: 697 QCFLSS--DTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLL 524
           QC  SS  D K    + H+L +L++  V      R+T HLL   L  S +++ LLR   +
Sbjct: 532 QCVDSSPDDVKIALQRTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQI 586

Query: 523 VGEKTREF 500
             +  R F
Sbjct: 587 QRQLYRNF 594


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 31  EFLKIFGLLLQLPSVV---IGGSLTNKMSSKVSRDTLYECVNAVL 156
           + +K+FG L+ L   +   +   LTN ++S  +   LYEC+N V+
Sbjct: 240 KIIKLFGALVPLEPRLGKKLLEPLTNLINSTSAMSLLYECINTVI 284


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 79  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 246
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


>AF039050-11|AAC47941.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 83 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 1   TXFXYRSHYREFLKIFGLLLQLPSV 75
           T F  + +YR  LK+FGL  Q P +
Sbjct: 304 TTFIIKDYYRGVLKLFGLAKQTPDI 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848,432
Number of Sequences: 27780
Number of extensions: 388991
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)