Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_K12
         (1137 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.52 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.52
 Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
 Frame = +2

Query: 656 PTLPXXGXXXQTXGGNXXXGPAXXXAGPXLXPXXXSXXRLXHXAPXGPR-PPSXXAPXAX 832
           P LP  G   +T        P+   + P   P   +   L   AP  P  PPS  AP A 
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS-APPSLPMGAPAAPPLPPS--APIAP 457

Query: 833 XGWFPTXLPQXXAAAPPLXXXPPXGPXXLXPXPGA 937
                  LP    AAPPL    P  P    P P A
Sbjct: 458 P------LPAGMPAAPPLPPAAPAPPPAPAPAPAA 486


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 785 APXGPRPPSXXAPXAXXGWFPTXLPQXXAAAPPLXXXPPXGPXXLXP 925
           AP  P P S   P       P+  P   A+APP+    P  P  L P
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,538,452
Number of Sequences: 5004
Number of extensions: 11934
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)