Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_K12
(1137 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 32 0.73
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.73
06_01_0178 + 1386981-1387505 31 1.3
02_05_0686 - 30900748-30902167,30903442-30904742 30 3.9
12_01_0841 - 7873458-7874225 29 5.2
05_01_0137 + 917533-917814,918080-918352 25 6.6
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 6.8
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 6.8
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 29 6.8
10_08_0213 - 15912048-15912716 29 9.0
08_01_0059 - 394001-394708 29 9.0
>09_06_0277 - 21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 32.3 bits (70), Expect = 0.73
Identities = 26/115 (22%), Positives = 31/115 (26%), Gaps = 2/115 (1%)
Frame = +1
Query: 799 PAPKXXGPXCXXG-VVPXXTSPXXXCXPSPXXXPPXRAXVPXPPXGGXXXXGXDFARXXP 975
P P P C ++P T P P PP P PP +
Sbjct: 379 PPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPPDISPSPPPSVTPLPPVVYPSPPE 438
Query: 976 XY-XXPIXGPXXSPXRXXXXXPXXHPHPXXPPRVXPGQXXFRXXPXSPXXXXXXP 1137
P P SP P P+P PP + P P P P
Sbjct: 439 VTPSPPEIAPYPSPPEIVPSPPEITPYP-SPPEIVPSPPEITPYPSPPEVVPGPP 492
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.3 bits (70), Expect = 0.73
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = +2
Query: 779 HXAPXGPRPPSXXAPXAXXGWFPTXLPQXXAAAPPLXXXPPXGPXXLXPXPGAAXXXXG 955
H A P PP+ A G P P A A P P GP P PGAA G
Sbjct: 327 HPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGP---PPPPGAAGRGGG 382
Score = 24.6 bits (51), Expect(2) = 9.5
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Frame = +3
Query: 876 PLPLXXXPXXGQXXXPPXRGXPXAGXGLRTXXSLVXXSYXGSXXXPX------AATXTXT 1037
PLP G PP P AG G T ++ + P AA
Sbjct: 289 PLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSG 348
Query: 1038 XPPPPPTXA 1064
PPPPP A
Sbjct: 349 PPPPPPPAA 357
Score = 22.2 bits (45), Expect(2) = 9.5
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +3
Query: 1041 PPPPPTXAXXGTXGXNXXSLGXXLPXXXAPXP 1136
PPPPP A G G +L P P P
Sbjct: 370 PPPPPGAAGRGGGGPPPPALPGG-PRARGPPP 400
>06_01_0178 + 1386981-1387505
Length = 174
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -1
Query: 924 GXRXXGPXGGXXXRGGAAAXXWGSXVGNHPXXAXGAXXLGGRGPXG 787
G R G GG RGGA+ G G GA GG+G G
Sbjct: 19 GGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAG 64
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 788 PXGPRPPSXXAPXAXXGWFPTXLPQXXAAAPPLXXXPPXG 907
P GP PP P G P P+ A+ PP P G
Sbjct: 359 PKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVPTG 398
>12_01_0841 - 7873458-7874225
Length = 255
Score = 29.5 bits (63), Expect = 5.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -1
Query: 936 APGWGXRXXGPXGGXXXRGGAAAXXWGSXVGNHPXXAXGAXXLGGRGPXG 787
A G G G GG +GG + +GS G + G GG G G
Sbjct: 64 ASGGGYGQGGGGGGGGGQGGGSGSGYGSGYGQGGGASGGGYGKGGGGGGG 113
Score = 28.7 bits (61), Expect = 9.0
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -1
Query: 936 APGWGXRXXGPXGGXXXRGGAAAXXWGSXVGNHPXXAXGAXXLGGRGPXG 787
A G G G GG +GG A +GS G+ GA GG G G
Sbjct: 99 ASGGGYGKGGGGGGGGGQGGGAGSGYGSGYGSGYGQGRGASG-GGYGQGG 147
>05_01_0137 + 917533-917814,918080-918352
Length = 184
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 1011 PXAATXTXTXPPPPPT 1058
P T T T PPPPP+
Sbjct: 59 PAPTTTTTTSPPPPPS 74
Score = 22.2 bits (45), Expect(2) = 6.6
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +3
Query: 1035 TXPPPPPTXAXXG 1073
T PPPPP A G
Sbjct: 85 TPPPPPPPAAGGG 97
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.1 bits (62), Expect = 6.8
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = +2
Query: 788 PXGPRPPSXXAPXAXXGWFPTXLPQXXAAAPPL--XXXPPXGPXXLXP 925
P P PP AP LPQ AA PP PP P P
Sbjct: 542 PAPPSPPQDPAPSPPHDPLAPSLPQAPAATPPQDPALTPPRAPTPTPP 589
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 6.8
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +2
Query: 785 APXGPRPPSXXAPXAXXGWFPTXLPQXXAAAPPLXXXP--PXGPXXLXPXPGA 937
AP PRPP + A + P APP P P GP P PG+
Sbjct: 898 APRVPRPPPAPSATANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGS 950
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 775 GASRAXXAPAPKXXGPXCXXGVVPXXTSPXXXCXPSPXXXPP 900
G+++ APAP P +VP T P P+P PP
Sbjct: 43 GSAQRPLAPAPLVKQPVLPTFLVPTSTPPAPTQSPAPAPTPP 84
>10_08_0213 - 15912048-15912716
Length = 222
Score = 28.7 bits (61), Expect = 9.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -1
Query: 924 GXRXXGPXGGXXXRGGAAAXXWGSXVGNHPXXAXGAXXLGGRGPXG 787
G G GG GG + +GS G+ GA GG G G
Sbjct: 72 GYGHGGGGGGGGGEGGGSGSGYGSGQGSGSGYGSGAFGAGGYGSGG 117
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 9.0
Identities = 20/68 (29%), Positives = 21/68 (30%)
Frame = +1
Query: 877 PSPXXXPPXRAXVPXPPXGGXXXXGXDFARXXPXYXXPIXGPXXSPXRXXXXXPXXHPHP 1056
P P PP A P PP R P PI P R P HP
Sbjct: 5 PPPRRAPPPPATPPPPPR-----------RAPPPPSPPIRPPPPPTPRPYAPPPPSHPLA 53
Query: 1057 XXPPRVXP 1080
PP + P
Sbjct: 54 PPPPHISP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,545,231
Number of Sequences: 37544
Number of extensions: 197938
Number of successful extensions: 1073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3444772820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -