Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_K09
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0479 + 23265910-23266084,23266252-23266430                       32   0.53 
11_08_0055 - 28095996-28096934                                         29   5.0  
06_03_1056 + 27239176-27242361                                         29   6.6  

>02_04_0479 + 23265910-23266084,23266252-23266430
          Length = 117

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 361 PSTTPQLLGYVLVTAVELLFRPLFHHQEMKERYNYPIFSALQ 236
           P+ TP L  ++ ++A   L  PLF H+     + +P+ +ALQ
Sbjct: 15  PAATPLLSPFITLSAAASLLPPLFGHRSPPSAWPWPLRTALQ 56


>11_08_0055 - 28095996-28096934
          Length = 312

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +1

Query: 355 YWGDITRDEANEKLRDTRD----GTFLVRNASNKDSGYTLTVRKGGANKLIKIYHH---E 513
           YW D++  +  +   D R     G +++ +      GY+L   K  A+    +YH     
Sbjct: 81  YWLDLSGHDLRDVGADIRHCQSKGVYMLLSIGGDGDGYSLPSSKSAADVAYNLYHSFLGR 140

Query: 514 GRYGFREPFEFKSVVDLVCYYSEY 585
            R G   PF   ++V+ V ++ ++
Sbjct: 141 PRAGIFRPFGDDTIVNGVNFFIDH 164


>06_03_1056 + 27239176-27242361
          Length = 1061

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/41 (29%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +3

Query: 33  SLRFAIVYAV*WWNREVRAT-TRTAKMKNLCHKNFHHALTY 152
           +L FA+++A+  W R++R++ T  A  +++ + N++  +TY
Sbjct: 678 ALCFAVMFALLRWRRKIRSSRTGNAAARSVLNGNYYPRVTY 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,464
Number of Sequences: 37544
Number of extensions: 348839
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)