Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_K01
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   140   3e-34
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   2.0  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  140 bits (338), Expect = 3e-34
 Identities = 71/175 (40%), Positives = 96/175 (54%), Gaps = 2/175 (1%)
 Frame = +1

Query: 232 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 411
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 412 SRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTIL 585
             I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGG 188

Query: 586 QAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIXYIRHLNNHFSKNH 750
           QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  H
Sbjct: 189 QAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTH 243



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 783 YXHFVDVV*LXLYXSIY*XGN 845
           Y HF DVV L LY +IY  G+
Sbjct: 253 YWHFCDVVWLFLYLTIYIWGS 273


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 556 ILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFH--GIHVIIGTLFLLIXYIRHLN 729
           I+ G  +T L         + +    Y +  F++  FH  GI +IIG +F ++ YI  L 
Sbjct: 312 IISGMGYTSLSVQYMTIPVYILGAATYIAASFLSDRFHHRGIILIIGNIFPIVGYILLLA 371

Query: 730 NHFSKNHXXFWI*SCS 777
              +K+   F    CS
Sbjct: 372 CQNNKSVLYFACYLCS 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,472
Number of Sequences: 5004
Number of extensions: 42493
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)