Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J24
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...   101   5e-22
U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protei...    31   0.87 
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   1.1  
AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   8.1  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   8.1  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   8.1  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score =  101 bits (243), Expect = 5e-22
 Identities = 40/56 (71%), Positives = 48/56 (85%)
 Frame = +1

Query: 124 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 291
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>U41624-5|AAF99941.1|  314|Caenorhabditis elegans Collagen protein
           174 protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +2

Query: 662 PPGERGXAXWAPFRFPXXXPXAPGXXG-GGXXXTSXKGGNXGFPKXRGIP 808
           PPG  G A  A  + P   P APG  G  G        GN G P   G P
Sbjct: 171 PPGPPGPAGSAGVKGPSGNPGAPGTDGPAGNKGGQGPPGNAGAPGANGNP 220


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 184 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 285
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>AF016445-5|AAC69059.1|  250|Caenorhabditis elegans Hypothetical
           protein T05B4.9 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 207 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 58
           M   A S  PR+  +  +    N     + +LNC S+T ++ ++P+ WRT
Sbjct: 93  MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 284
           M I + + WL+P ++F+H+    Q +   H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -1

Query: 801 PRXXGKPXFPPLXEVXXXPPPXXPGAXGXXXGXRKGAQXANPLSPGG 661
           P   G P  P        PPP  PGA G     + G     P  PGG
Sbjct: 394 PSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 183 MPILLQQAWLNPQVRFEHMQTVLQRV 260
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 656 RPPPGERGXAXWAPFRFPXXXPXAPGXXGGGXXXTSXKGGNXGFPKXRG 802
           R PPG RG A  A        P +PG  G G   +    G  G P  +G
Sbjct: 166 RGPPGPRGPAGDAGSPGQPGHPGSPGNPGRGGQRSRGTPGASGRPGPQG 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,741
Number of Sequences: 27780
Number of extensions: 226027
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)